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(-) Description

Title :  TACHYPLESIN I IN DODECYLPHOSPHOCHOLINE MICELLES
 
Authors :  M. Mizuguchi, S. Kamata, S. Kawabata, N. Fujitani, K. Kawano
Date :  11 Aug 04  (Deposition) - 09 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A
Keywords :  Tachyplesin, Antimicrobial, Peptide, Dpc, Dodecylphosphochol, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Mizuguchi, S. Kamata, S. Kawabata, N. Fujitani, K. Kawano
Solution Structure Of Tachyplesin I In Dodecylphosphocholine
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TACHYPLESIN I
    Chains: A
    Organism Scientific: TACHYPLEUS TRIDENTATUS
    Organism Taxid: 6853
    Tissue: HEMOCYTE

 Structural Features

(-) Chains, Units

  
NMR Structure : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:17BINDING SITE FOR RESIDUE NH2 A 18

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:3 -A:16
2A:7 -A:12

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WO1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WO1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1WO1)

(-) Exons   (0, 0)

(no "Exon" information available for 1WO1)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:18
 aligned with TAC1_TACTR | P14213 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:18
                                    33        
            TAC1_TACTR   24 KWCFRVCYRGICYRRCRG 41
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ...eeeee..eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  1wo1 A  1 KWCFRVCYRGICYRRCRx 18
                                    10       |
                                            18-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WO1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WO1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1WO1)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (TAC1_TACTR | P14213)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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  1wo1
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAC1_TACTR | P14213: 1ma2 1ma4 1ma5 1ma6 1wo0 2mdb 2rtv

(-) Related Entries Specified in the PDB File

1wo0 THE SAME PROTEIN IN H2O