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(-) Description

Title :  TACHYPLESIN I IN WATER
 
Authors :  T. Kushibiki, M. Kamiya, T. Aizawa, Y. Kumaki, T. Kikukawa, M. Mizuguch M. Demura, S. I. Kawabata, K. Kawano
Date :  19 Sep 13  (Deposition) - 19 Feb 14  (Release) - 12 Mar 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Kushibiki, M. Kamiya, T. Aizawa, Y. Kumaki, T. Kikukawa, M. Mizuguchi, M. Demura, S. I. Kawabata, K. Kawano
Interaction Between Tachyplesin I, An Antimicrobial Peptide Derived From Horseshoe Crab, And Lipopolysaccharide.
Biochim. Biophys. Acta V. 1844 527 2014
PubMed-ID: 24389234  |  Reference-DOI: 10.1016/J.BBAPAP.2013.12.017

(-) Compounds

Molecule 1 - TACHYPLESIN-1
    Chains: A
    Engineered: YES
    Organism Common: CHINESE HORSESHOE CRAB,JAPANESE HORSESHOE CRAB
    Organism Scientific: TACHYPLEUS TRIDENTATUS
    Organism Taxid: 6853
    Other Details: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED.
    Synonym: TACHYPLESIN I
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP
NMR Structure * (1, 1)
No.NameCountTypeFull Name
1NH21Mod. Amino AcidAMINO GROUP

(-) Sites  (0, 0)

(no "Site" information available for 2RTV)

(-) SS Bonds  (2, 2)

NMR Structure
No.Residues
1A:3 -A:16
2A:7 -A:12

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2RTV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2RTV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2RTV)

(-) Exons   (0, 0)

(no "Exon" information available for 2RTV)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:18
 aligned with TAC1_TACTR | P14213 from UniProtKB/Swiss-Prot  Length:77

    Alignment length:18
                                    33        
            TAC1_TACTR   24 KWCFRVCYRGICYRRCRG 41
               SCOP domains ------------------ SCOP domains
               CATH domains ------------------ CATH domains
               Pfam domains ------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------ SAPs(SNPs)
                    PROSITE ------------------ PROSITE
                 Transcript ------------------ Transcript
                  2rtv A  1 KWCFRVCYRGICYRRCRx 18
                                    10       |
                                            18-NH2
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2RTV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2RTV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2RTV)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (TAC1_TACTR | P14213)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TAC1_TACTR | P14213: 1ma2 1ma4 1ma5 1ma6 1wo0 1wo1 2mdb

(-) Related Entries Specified in the PDB File

2mdb