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(-) Description

Title :  SOLUTION STRUCTURE OF THE R3H DOMAIN FROM HUMAN HYPOTHETICAL PROTEIN BAA76846
 
Authors :  T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  28 May 04  (Deposition) - 28 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  R3H Domain, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Nagata, Y. Muto, M. Inoue, T. Kigawa, T. Terada, M. Shirouzu, S. Yokoyama
Solution Structure Of The R3H Domain From Human Hypothetical Protein Baa76846
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL KIAA1002 PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040119-75
    Expression System Vector Type: PLASMID
    Fragment: R3H DOMAIN
    Gene: RIKEN CDNA HK09859
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1WHR)

(-) Sites  (0, 0)

(no "Site" information available for 1WHR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WHR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WHR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WHR)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1R3HPS51061 R3H domain profile.R3HD2_HUMAN169-232  1A:155-218
2SUZPS51673 SUZ domain profile.R3HD2_HUMAN233-310  1A:219-248

(-) Exons   (6, 6)

NMR Structure (6, 6)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.4bENST000003589074bENSE00001600262chr12:57704246-57704047200R3HD2_HUMAN1-55550--
1.5ENST000003589075ENSE00001746140chr12:57697000-5769695942R3HD2_HUMAN56-69140--
1.6ENST000003589076ENSE00001704164chr12:57693964-5769387887R3HD2_HUMAN70-98290--
1.7ENST000003589077ENSE00001705968chr12:57693261-57693135127R3HD2_HUMAN99-141431A:126-1294
1.8ENST000003589078ENSE00001717201chr12:57691951-5769187379R3HD2_HUMAN141-167271A:129-153 (gaps)27
1.9ENST000003589079ENSE00001733477chr12:57691170-5769111160R3HD2_HUMAN167-187211A:153-17321
1.10bENST0000035890710bENSE00001621494chr12:57690334-57690194141R3HD2_HUMAN187-234481A:173-22048
1.11aENST0000035890711aENSE00001618758chr12:57689290-57689182109R3HD2_HUMAN234-270371A:220-24425
1.13ENST0000035890713ENSE00001672243chr12:57682823-5768279232R3HD2_HUMAN271-281110--
1.14ENST0000035890714ENSE00001801990chr12:57682693-5768264054R3HD2_HUMAN281-299191A:246-2494
1.15ENST0000035890715ENSE00001775362chr12:57677839-57677607233R3HD2_HUMAN299-377790--
1.16aENST0000035890716aENSE00001296391chr12:57674313-57674141173R3HD2_HUMAN377-434580--
1.18ENST0000035890718ENSE00001303911chr12:57663777-57663535243R3HD2_HUMAN435-515810--
1.19bENST0000035890719bENSE00001294786chr12:57663232-57663106127R3HD2_HUMAN516-558430--
1.20ENST0000035890720ENSE00001302752chr12:57662865-57662705161R3HD2_HUMAN558-611540--
1.21ENST0000035890721ENSE00001329647chr12:57662240-57662086155R3HD2_HUMAN612-663520--
1.22ENST0000035890722ENSE00001306016chr12:57660614-57660514101R3HD2_HUMAN663-697350--
1.23ENST0000035890723ENSE00001297380chr12:57652842-57652673170R3HD2_HUMAN697-753570--
1.24ENST0000035890724ENSE00001315769chr12:57651920-57651773148R3HD2_HUMAN754-803500--
1.25ENST0000035890725ENSE00001321877chr12:57650294-5765019798R3HD2_HUMAN803-835330--
1.26ENST0000035890726ENSE00001309387chr12:57649857-5764977385R3HD2_HUMAN836-864290--
1.27cENST0000035890727cENSE00001297406chr12:57648896-576475481349R3HD2_HUMAN864-9761130--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:124
 aligned with R3HD2_HUMAN | Q9Y2K5 from UniProtKB/Swiss-Prot  Length:976

    Alignment length:154
                                   147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    
          R3HD2_HUMAN   138 LSRDSSQEYTDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILKRDDASMDRDDNQTGQNGYLNDIRLSKEAFSSSS 291
               SCOP domains d1whra_   A: R3H domain protein KIAA1002                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------R3H-1whrA01 A:162-215                                 -------------------------------------------------------------- Pfam domains
         Sec.struct. author .......--.......hhhhhhhhhhh....hhhhhhhhhhhhhhhh.....eee.....hhhhhhhhhhhhhh...eee......eeee...........hhh.................-------------.---------------.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------R3H  PDB: A:155-218 UniProt: 169-232                            SUZ  PDB: A:219-248 UniProt: 233-310                        PROSITE
           Transcript 1 (1) 1.7 ---------------------------------------------Exon 1.10b  PDB: A:173-220 UniProt: 187-234     ------------------------------------Exon 1.13  ---------- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.8 UniProt: 141-167  ------------------------------------------------------------------Exon 1.11a  PDB: A:220-244           ----------Exon 1.14   Transcript 1 (2)
           Transcript 1 (3) -----------------------------Exon 1.9             -------------------------------------------------------------------------------------------------------- Transcript 1 (3)
                 1whr A 126 GSSGSSG--TDSTGIDLHEFLVNTLKKNPRDRMMLLKLEQEILEFINDNNNQFKKFPQMTSYHRMLLHRVAAYFGMDHNVDQTGKAVIINKTSNTRIPEQRFSEHIKDEKNTEFQQRFILS-------------G---------------PSSG 249
                                  |133       143       153       163       173       183       193       203       213       223       233       243|        -    |    -         -|   
                                132  |                                                                                                            244           245             246   
                                   133
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WHR)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: R3H] (3)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (R3HD2_HUMAN | Q9Y2K5)
molecular function
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
cellular component
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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