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(-) Description

Title :  SOLUTION STRUCTURE OF THE 2ND ZF-AN1 DOMAIN OF MOUSE RIKEN CDNA 2310008M20 PROTEIN
 
Authors :  T. Tomizawa, T. Kigawa, K. Saito, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  26 May 04  (Deposition) - 26 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-An1 Domain, Zinc Binding, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, K. Saito, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The 2Nd Zf-An1 Domain Of Mouse Riken Cdna 2310008M20 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIKEN CDNA 2310008M20 PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P030324-10
    Expression System Vector Type: PLASMID
    Fragment: ZF-AN1 DOMAIN
    Gene: RIKEN CDNA 5730471C05
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:28 , CYS A:33 , CYS A:51 , HIS A:54BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:43 , CYS A:46 , HIS A:60 , CYS A:62BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WFE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WFE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WFE)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_AN1PS51039 Zinc finger AN1-type profile.ZFAN1_MOUSE7-54
61-107		  1-
A:25-71

(-) Exons   (0, 0)

(no "Exon" information available for 1WFE)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:86
 aligned with ZFAN1_MOUSE | Q8BFR6 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:112
                                    36        46        56        66        76        86        96       106       116       126       136  
          ZFAN1_MOUSE    27 GCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSG 138
               SCOP domains d1wf          ea_ A: AN1-type zinc finger protein 1                                                              SCOP domains
               CATH domains 1wfe          A00 A:1-86 Riken cdna 2310008m20 protein                                                           CATH domains
               Pfam domains -------------------------------------zf-AN1-1wfeA01 A:28-70                     -------------------------------- Pfam domains
         Sec.struct. author ....----------.....................ee........ee...ee......eehhhhh.hhhhh...................------..----------.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ZF_AN1  PDB: - UniProt: 7-54------ZF_AN1  PDB: A:25-71 UniProt: 61-107           ------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 1wfe A   1 GSSG----------SSGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVR------SG----------PSSG  86
                               |     -    |   10        20        30        40        50        60        70        80      || -        84  
                               4          5                                                                         80     81|         83   
                                                                                                                            82
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Few Secondary Structures (1120)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-AN1] (8)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (ZFAN1_MOUSE | Q8BFR6)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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 Related Entries

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        ZFAN1_MOUSE | Q8BFR6: 1wys

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