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(-) Description

Title :  SOLUTION STRUCTURE OF THE FIRST ZF-AN1 DOMAIN OF MOUSE RIKEN CDNA 2310008M20 PROTEIN
 
Authors :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  15 Feb 05  (Deposition) - 15 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Zf-An1 Domain, Zinc Binding, Nppsfa, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Tomizawa, T. Kigawa, S. Koshiba, M. Inoue, S. Yokoyama
Solution Structure Of The First Zf-An1 Domain Of Mouse Riken Cdna 2310008M20 Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - RIKEN CDNA 2310008M20 PROTEIN
    Chains: A
    Engineered: YES
    Expression System Plasmid: P040906-12
    Expression System Vector Type: PLASMID
    Fragment: ZF-AN1 DOMAIN
    Gene: RIKEN CDNA 5730471C05
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Other Details: CELL-FREE PROTEIN SYNTHESIS

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:17 , CYS A:22 , CYS A:40 , HIS A:43BINDING SITE FOR RESIDUE ZN A 201
2AC2SOFTWARECYS A:32 , CYS A:35 , PHE A:39 , HIS A:49 , CYS A:51BINDING SITE FOR RESIDUE ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1WYS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1WYS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1WYS)

(-) PROSITE Motifs  (1, 2)

NMR Structure (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ZF_AN1PS51039 Zinc finger AN1-type profile.ZFAN1_MOUSE7-54
61-107		  2A:14-61
A:68-72

(-) Exons   (0, 0)

(no "Exon" information available for 1WYS)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:75
 aligned with ZFAN1_MOUSE | Q8BFR6 from UniProtKB/Swiss-Prot  Length:268

    Alignment length:145
                                   1                                                                                                                                         
                                   | 3        13        23        33        43        53        63        73        83        93       103       113       123       133     
          ZFAN1_MOUSE     - -------MAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSCSFKGCTDVELVAVICPYCEKNFCLRHRHQSDHDCEKLEVAKPRMAATQKLVRDIVDAKTGGAASKGRKGAKSSG 138
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------zf-AN1-1wysA01 A:17-62                        ----------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............................ee......ee................................---------------.-------------------------------------------------------... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------ZF_AN1  PDB: A:14-61 UniProt: 7-54              ------ZF_AN1  PDB: A:68-72 UniProt: 61-107           ------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wys A   1 GSSGSSGMAELDIGQHCQVQHCRQRDFLPFVCDGCSGIFCLEHRSKDSHGCSEVNVVKERPKTDEHKSYSG---------------P-------------------------------------------------------SSG  75
                                    10        20        30        40        50        60        70|        -      |  -         -         -         -         -         -  |  
                                                                                                 71              72                                                      73
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1WYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1WYS)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: zf-AN1] (8)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (ZFAN1_MOUSE | Q8BFR6)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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  ZFAN1_MOUSE | Q8BFR6
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 Related Entries

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        ZFAN1_MOUSE | Q8BFR6: 1wfe

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