1WA3 - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Title :   MECHANISM OF THE CLASS I KDPG ALDOLASE

Authors :   S. W. B. Fullerton, J. S. Griffiths, A. B. Merkel, N. J. Wymer, M. J. Hutch C. A. Fierke, E. J. Toone, J. H. Naismith

Date :   22 Oct 04 (Deposition) - 26 Jan 05 (Release) - 23 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C  (1x)
Biol. Unit 2: D,E,F  (1x)

Keywords :   Kdpg, Pyruvate, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. W. B. Fullerton, J. S. Griffiths, A. B. Merkel, M. Cheriyan, N. J. Wymer, M. J. Hutchins, C. A. Fierke, E. J. Toone, J. H. Naismith
Mechanism Of The Class I Kdpg Aldolase.
Bioorg. Med. Chem. V. 14 3002 2006
PubMed-ID: 16403639 | Reference-DOI: 10.1016/J.BMC.2005.12.022

Molecule 1 - 2-KETO-3-DEOXY-6-PHOSPHOGLUCONATE ALDOLASE
	Atcc	:	43589
	Chains	:	A, B, C, D, E, F
	EC Number	:	4.1.2.14
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	THERMOTOGA MARITIMA
	Organism Taxid	:	2336
	Other Details	:	SCHIFF BASE FORMED WITH PYRUVATE IN THE ACTIVE SITE
	Other Details - Source	:	DSM 3109
	Synonym	:	4-HYDROXY-2-OXOGLUTARATE ALDOLASE, 2-DEHYDRO-3-DEOXYPHOSPHOGLUCONATE ALDOLASE, 4-HYDROXY-2-OXOGLUTARATE ALDOLASE

		1	2	3	4	5	6
Asymmetric Unit	:	A	B	C	D	E	F
Biological Unit 1 (1x)	:	A	B	C
Biological Unit 2 (1x)	:				D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 12)

No.	Name	Count	Type	Full Name
1	PYR	6	Ligand/Ion	PYRUVIC ACID
2	SO4	6	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	PYR	3	Ligand/Ion	PYRUVIC ACID
2	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 6)

No.	Name	Count	Type	Full Name
1	PYR	3	Ligand/Ion	PYRUVIC ACID
2	SO4	3	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:157 , GLY A:158 , GLY A:178 , SER A:179 , HOH A:2008 , HOH A:2065 , HOH A:2073 , HOH A:2074 , HOH B:2050	BINDING SITE FOR RESIDUE SO4 A1205
02	AC2	SOFTWARE	THR B:156 , GLY B:157 , GLY B:158 , GLY B:178 , SER B:179 , HOH B:2047 , HOH B:2069 , HOH B:2070 , HOH B:2071 , HOH B:2072 , HOH B:2073	BINDING SITE FOR RESIDUE SO4 B1205
03	AC3	SOFTWARE	GLY C:157 , GLY C:158 , GLY C:178 , SER C:179 , HOH C:2027 , HOH C:2038 , HOH C:2040 , HOH C:2041	BINDING SITE FOR RESIDUE SO4 C1205
04	AC4	SOFTWARE	GLY D:158 , GLY D:178 , SER D:179 , HOH D:2042 , HOH D:2045 , HOH D:2049 , HOH E:2032	BINDING SITE FOR RESIDUE SO4 D1206
05	AC5	SOFTWARE	GLY E:157 , GLY E:158 , GLY E:178 , SER E:179 , HOH E:2004 , HOH E:2036 , HOH E:2046	BINDING SITE FOR RESIDUE SO4 E1205
06	AC6	SOFTWARE	GLY F:157 , GLY F:158 , GLY F:178 , SER F:179 , HOH F:2015 , HOH F:2020 , HOH F:2021 , HOH F:2022 , HOH F:2023	BINDING SITE FOR RESIDUE SO4 F1205
07	AC7	SOFTWARE	ARG A:17 , THR A:69 , VAL A:88 , SER A:89 , PRO A:90 , LYS A:129 , PHE A:131	BINDING SITE FOR RESIDUE PYR A1204
08	AC8	SOFTWARE	ARG B:17 , GLY B:68 , THR B:69 , VAL B:88 , SER B:89 , PRO B:90 , LYS B:129 , PHE B:131 , HOH B:2045	BINDING SITE FOR RESIDUE PYR B1204
09	AC9	SOFTWARE	ARG C:17 , THR C:69 , SER C:89 , PRO C:90 , LYS C:129 , PHE C:131	BINDING SITE FOR RESIDUE PYR C1204
10	BC1	SOFTWARE	ARG D:17 , THR D:69 , SER D:89 , PRO D:90 , LYS D:129 , PHE D:131	BINDING SITE FOR RESIDUE PYR D1205
11	BC2	SOFTWARE	ARG E:17 , THR E:69 , VAL E:88 , SER E:89 , PRO E:90 , LYS E:129 , PHE E:131	BINDING SITE FOR RESIDUE PYR E1204
12	BC3	SOFTWARE	ARG F:17 , GLU F:40 , THR F:69 , VAL F:88 , SER F:89 , PRO F:90 , LYS F:129 , PHE F:131	BINDING SITE FOR RESIDUE PYR F1204

Asymmetric Unit

No.	Residues
1	A:165	-	A:203
2	B:165	-	B:203
3	C:165	-	C:203
4	D:165	-	D:203
5	E:165	-	E:203
6	F:165	-	F:203

Asymmetric Unit

No.	Residues
1	Phe A:131	-	Pro A:132
2	Phe B:131	-	Pro B:132
3	Phe C:131	-	Pro C:132
4	Phe D:131	-	Pro D:132
5	Phe E:131	-	Pro E:132
6	Phe F:131	-	Pro F:132

(no "SAP(SNP)/Variant" information available for 1WA3)

(no "PROSITE Motif" information available for 1WA3)

(no "Exon" information available for 1WA3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:202
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:202
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  
         Q9WXS1_THEMA     2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
               SCOP domains d1wa3a_ A: automated matches                                                                                                                                                                               SCOP domains
               CATH domains 1wa3A00 A:2-203 Aldolase class I                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh..eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhh...eeehhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 A   2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain B from PDB  Type:PROTEIN  Length:202
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:202
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  
         Q9WXS1_THEMA     2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
               SCOP domains d1wa3b_ B: automated matches                                                                                                                                                                               SCOP domains
               CATH domains 1wa3B00 B:2-203 Aldolase class I                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhh...eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhh...eeehhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 B   2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain C from PDB  Type:PROTEIN  Length:201
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:201
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202 
         Q9WXS1_THEMA     3 MEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
               SCOP domains d1wa3c_ C: automated matches                                                                                                                                                                              SCOP domains
               CATH domains 1wa3C00 C:3-203 Aldolase class I                                                                                                                                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhh.eeeee...hhhhhhhhhhh...eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhh...eeehhhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 C   3 MEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Chain D from PDB  Type:PROTEIN  Length:203
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201   
         Q9WXS1_THEMA     2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCT 204
               SCOP domains d1wa3d_ D: automated matches                                                                                                                                                                                SCOP domains
               CATH domains 1wa3D00 D:2-204 Aldolase class I                                                                                                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh...eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....eeee.......hhhhhhhh....eeehhhhhh.hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 D   2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGCT 204
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain E from PDB  Type:PROTEIN  Length:202
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:202
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201  
         Q9WXS1_THEMA     2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
               SCOP domains d1wa3e_ E: automated matches                                                                                                                                                                               SCOP domains
               CATH domains 1wa3E00 E:2-203 Aldolase class I                                                                                                                                                                           CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhheeeee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhh...eeeee...hhhhhhhhhhh...eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhh......eeee.......hhhhhhhh....eeehhhhhh.hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 E   2 KMEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201

Chain F from PDB  Type:PROTEIN  Length:201
 aligned with Q9WXS1_THEMA | Q9WXS1 from UniProtKB/TrEMBL  Length:205

    Alignment length:201
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202 
         Q9WXS1_THEMA     3 MEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
               SCOP domains d1wa3f_ F: automated matches                                                                                                                                                                              SCOP domains
               CATH domains 1wa3F00 F:3-203 Aldolase class I                                                                                                                                                                          CATH domains
           Pfam domains (1) Aldolase-1wa3F01 F:3-197                                                                                                                                                                           ------ Pfam domains (1)
           Pfam domains (2) Aldolase-1wa3F02 F:3-197                                                                                                                                                                           ------ Pfam domains (2)
           Pfam domains (3) Aldolase-1wa3F03 F:3-197                                                                                                                                                                           ------ Pfam domains (3)
           Pfam domains (4) Aldolase-1wa3F04 F:3-197                                                                                                                                                                           ------ Pfam domains (4)
           Pfam domains (5) Aldolase-1wa3F05 F:3-197                                                                                                                                                                           ------ Pfam domains (5)
           Pfam domains (6) Aldolase-1wa3F06 F:3-197                                                                                                                                                                           ------ Pfam domains (6)
         Sec.struct. author hhhhhhhhheeeee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhh...eee....hhhhhhhhhhhh.eee.ee.hhhhhhhhhhh...eeee.hhhhhhhhhhhhhhh.....eeee.......hhhhhhhhh...eeehhhhhh.hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1wa3 F   3 MEELFKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTILKLFPGEVVGPQFVKAMKGPFPNVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKGTPDEVREKAKAFVEKIRGC 203
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Aldolase (457)

Family: Class I aldolase (182)

Protein domain: automated matches (54)

Thermotoga maritima [TaxId: 2336] (3)

1a	d1wa3a_	A:
1b	d1wa3b_	B:
1c	d1wa3c_	C:
1d	d1wa3d_	D:
1e	d1wa3e_	E:
1f	d1wa3f_	F:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Thermotoga maritima. Organism_taxid: 2336. (13)

1a	1wa3D00	D:2-204
1b	1wa3A00	A:2-203
1c	1wa3B00	B:2-203
1d	1wa3E00	E:2-203
1e	1wa3C00	C:3-203
1f	1wa3F00	F:3-203

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: TIM_barrel (694)

Family: Aldolase (10)

Thermotoga maritima (2)

1a	Aldolase-1wa3F01	F:3-197
1b	Aldolase-1wa3F02	F:3-197
1c	Aldolase-1wa3F03	F:3-197
1d	Aldolase-1wa3F04	F:3-197
1e	Aldolase-1wa3F05	F:3-197
1f	Aldolase-1wa3F06	F:3-197

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q9WXS1_THEMA | Q9WXS1)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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		SO4	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

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	Cis Peptide Bonds
		Phe A:131 - Pro A:132	[ RasMol ]
		Phe B:131 - Pro B:132	[ RasMol ]
		Phe C:131 - Pro C:132	[ RasMol ]
		Phe D:131 - Pro D:132	[ RasMol ]
		Phe E:131 - Pro E:132	[ RasMol ]
		Phe F:131 - Pro F:132	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format \| Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
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Access by PDB/NDB ID
	1wa3
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
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Access by UniProt ID/Accession number
	Q9WXS1_THEMA \| Q9WXS1
		Comparative Protein Structure Models	:	ModBase
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Access by Enzyme Classificator (EC Number)
	4.1.2.14
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	Q9WXS1_THEMA \| Q9WXS1
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UniProtKB/TrEMBL
	Q9WXS1_THEMA \| Q9WXS1	:	1vlw 5kp9

1vlw	CRYSTAL STRUCTURE OF 2-DEHYDRO-3- DEOXYPHOSPHOGLUCONATEALDOLASE/4-HYDROXY-2- OXOGLUTARATE ALDOLASE (TM0066) FROMTHERMOTOGA MARITIMA AT 2.30 A RESOLUTION

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 12)

Sites (12, 12)

SS Bonds (6, 6)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (1, 6)

Gene Ontology (3, 3)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File