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1WA3
Biol. Unit 2
Info
Asym.Unit (197 KB)
Biol.Unit 1 (98 KB)
Biol.Unit 2 (97 KB)
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(1)
Title
:
MECHANISM OF THE CLASS I KDPG ALDOLASE
Authors
:
S. W. B. Fullerton, J. S. Griffiths, A. B. Merkel, N. J. Wymer, M. J. Hutch C. A. Fierke, E. J. Toone, J. H. Naismith
Date
:
22 Oct 04 (Deposition) - 26 Jan 05 (Release) - 23 Oct 13 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C (1x)
Biol. Unit 2: D,E,F (1x)
Keywords
:
Kdpg, Pyruvate, Lyase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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)
Reference
:
S. W. B. Fullerton, J. S. Griffiths, A. B. Merkel, M. Cheriyan, N. J. Wymer, M. J. Hutchins, C. A. Fierke, E. J. Toone, J. H. Naismith
Mechanism Of The Class I Kdpg Aldolase.
Bioorg. Med. Chem. V. 14 3002 2006
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Hetero Components
(2, 6)
Info
All Hetero Components
1a: PYRUVIC ACID (PYRa)
1b: PYRUVIC ACID (PYRb)
1c: PYRUVIC ACID (PYRc)
1d: PYRUVIC ACID (PYRd)
1e: PYRUVIC ACID (PYRe)
1f: PYRUVIC ACID (PYRf)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
View:
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Label:
No.
Name
Count
Type
Full Name
1
PYR
3
Ligand/Ion
PYRUVIC ACID
2
SO4
3
Ligand/Ion
SULFATE ION
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Sites
(6, 6)
Info
All Sites
1: AC4 (SOFTWARE)
2: AC5 (SOFTWARE)
3: AC6 (SOFTWARE)
4: BC1 (SOFTWARE)
5: BC2 (SOFTWARE)
6: BC3 (SOFTWARE)
View:
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No.
Name
Evidence
Residues
Description
1
AC4
SOFTWARE
GLY D:158 , GLY D:178 , SER D:179 , HOH D:2042 , HOH D:2045 , HOH D:2049 , HOH E:2032
BINDING SITE FOR RESIDUE SO4 D1206
2
AC5
SOFTWARE
GLY E:157 , GLY E:158 , GLY E:178 , SER E:179 , HOH E:2004 , HOH E:2036 , HOH E:2046
BINDING SITE FOR RESIDUE SO4 E1205
3
AC6
SOFTWARE
GLY F:157 , GLY F:158 , GLY F:178 , SER F:179 , HOH F:2015 , HOH F:2020 , HOH F:2021 , HOH F:2022 , HOH F:2023
BINDING SITE FOR RESIDUE SO4 F1205
4
BC1
SOFTWARE
ARG D:17 , THR D:69 , SER D:89 , PRO D:90 , LYS D:129 , PHE D:131
BINDING SITE FOR RESIDUE PYR D1205
5
BC2
SOFTWARE
ARG E:17 , THR E:69 , VAL E:88 , SER E:89 , PRO E:90 , LYS E:129 , PHE E:131
BINDING SITE FOR RESIDUE PYR E1204
6
BC3
SOFTWARE
ARG F:17 , GLU F:40 , THR F:69 , VAL F:88 , SER F:89 , PRO F:90 , LYS F:129 , PHE F:131
BINDING SITE FOR RESIDUE PYR F1204
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1wa3a_ (A:)
1b: SCOP_d1wa3b_ (B:)
1c: SCOP_d1wa3c_ (C:)
1d: SCOP_d1wa3d_ (D:)
1e: SCOP_d1wa3e_ (E:)
1f: SCOP_d1wa3f_ (F:)
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)
Protein Domains
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
TIM beta/alpha-barrel
(3956)
Superfamily
:
Aldolase
(457)
Family
:
Class I aldolase
(182)
Protein domain
:
automated matches
(54)
Thermotoga maritima [TaxId: 2336]
(3)
1a
d1wa3a_
A:
1b
d1wa3b_
B:
1c
d1wa3c_
C:
1d
d1wa3d_
D:
1e
d1wa3e_
E:
1f
d1wa3f_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1wa3D00 (D:2-204)
1b: CATH_1wa3A00 (A:2-203)
1c: CATH_1wa3B00 (B:2-203)
1d: CATH_1wa3E00 (E:2-203)
1e: CATH_1wa3C00 (C:3-203)
1f: CATH_1wa3F00 (F:3-203)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Aldolase class I
(887)
Thermotoga maritima. Organism_taxid: 2336.
(13)
1a
1wa3D00
D:2-204
1b
1wa3A00
A:2-203
1c
1wa3B00
B:2-203
1d
1wa3E00
E:2-203
1e
1wa3C00
C:3-203
1f
1wa3F00
F:3-203
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Pfam Domains
(1, 6)
Info
all PFAM domains
1a: PFAM_Aldolase_1wa3F01 (F:3-197)
1b: PFAM_Aldolase_1wa3F02 (F:3-197)
1c: PFAM_Aldolase_1wa3F03 (F:3-197)
1d: PFAM_Aldolase_1wa3F04 (F:3-197)
1e: PFAM_Aldolase_1wa3F05 (F:3-197)
1f: PFAM_Aldolase_1wa3F06 (F:3-197)
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Clan
:
TIM_barrel
(694)
Family
:
Aldolase
(10)
Thermotoga maritima
(2)
1a
Aldolase-1wa3F01
F:3-197
1b
Aldolase-1wa3F02
F:3-197
1c
Aldolase-1wa3F03
F:3-197
1d
Aldolase-1wa3F04
F:3-197
1e
Aldolase-1wa3F05
F:3-197
1f
Aldolase-1wa3F06
F:3-197
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (197 KB)
Header - Asym.Unit
Biol.Unit 1 (98 KB)
Header - Biol.Unit 1
Biol.Unit 2 (97 KB)
Header - Biol.Unit 2
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