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(-) Description

Title :  FEGLYMYCIN P64 CRYSTAL FORM
 
Authors :  G. Bunkoczi, L. Vertesy, G. M. Sheldrick
Date :  08 Sep 04  (Deposition) - 08 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Antiviral, Anti Hiv, Antibacterial, Antibiotic (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Bunkoczi, L. Vertesy, G. M. Sheldrick
The Antiviral Antibiotic Feglymycin: First Direct Methods Solution Of A 1000Plus Equal-Atom Structure
Angew. Chem. Int. Ed. Engl. V. 44 1340 2005
PubMed-ID: 15674989  |  Reference-DOI: 10.1002/ANIE.200461933

(-) Compounds

Molecule 1 - FEGLYMYCIN
    Atcc: DSM 11171
    Chains: A, B, C, D, E, F, G, H
    Organism Scientific: STREPTOMYCES SP.
    Organism Taxid: 1931
    Other Details: GERMAN COLLECTION OF MICROORGANISMS (DSM)

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 77)

Asymmetric Unit (5, 77)
No.NameCountTypeFull Name
1D3P40Mod. Amino Acid(2R)-AMINO(3,5-DIHYDROXYPHENYL)ACETIC ACID
2D4P24Mod. Amino Acid(2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID
3FLC1Ligand/IonCITRATE ANION
4GHP8Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5IPA4Ligand/IonISOPROPYL ALCOHOL
Biological Unit 1 (4, 20)
No.NameCountTypeFull Name
1D3P10Mod. Amino Acid(2R)-AMINO(3,5-DIHYDROXYPHENYL)ACETIC ACID
2D4P6Mod. Amino Acid(2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID
3FLC-1Ligand/IonCITRATE ANION
4GHP2Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5IPA2Ligand/IonISOPROPYL ALCOHOL
Biological Unit 2 (3, 18)
No.NameCountTypeFull Name
1D3P10Mod. Amino Acid(2R)-AMINO(3,5-DIHYDROXYPHENYL)ACETIC ACID
2D4P6Mod. Amino Acid(2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID
3FLC-1Ligand/IonCITRATE ANION
4GHP2Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5IPA-1Ligand/IonISOPROPYL ALCOHOL
Biological Unit 3 (4, 19)
No.NameCountTypeFull Name
1D3P10Mod. Amino Acid(2R)-AMINO(3,5-DIHYDROXYPHENYL)ACETIC ACID
2D4P6Mod. Amino Acid(2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID
3FLC-1Ligand/IonCITRATE ANION
4GHP2Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5IPA1Ligand/IonISOPROPYL ALCOHOL
Biological Unit 4 (5, 20)
No.NameCountTypeFull Name
1D3P10Mod. Amino Acid(2R)-AMINO(3,5-DIHYDROXYPHENYL)ACETIC ACID
2D4P6Mod. Amino Acid(2S)-AMINO(4-HYDROXYPHENYL)ACETIC ACID
3FLC1Ligand/IonCITRATE ANION
4GHP2Mod. Amino Acid(2R)-AMINO(4-HYDROXYPHENYL)ETHANOIC ACID
5IPA1Ligand/IonISOPROPYL ALCOHOL

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWARED4P B:5 , HOH G:2004 , D3P H:8BINDING SITE FOR RESIDUE FLC G1015
02AC2SOFTWAREGHP A:1 , D3P A:2 , D3P A:4 , D4P A:5 , IPA A:1015 , HOH A:2002 , GHP C:1BINDING SITE FOR RESIDUE IPA A1014
03AC3SOFTWAREGHP A:1 , IPA A:1014 , HOH A:2013 , D3P C:2 , D3P C:4 , D4P C:5BINDING SITE FOR RESIDUE IPA A1015
04AC4SOFTWARED3P E:10 , D4P E:11 , VAL F:3BINDING SITE FOR RESIDUE IPA E1014
05AC5SOFTWAREGHP E:1 , D3P G:2 , D3P G:4 , D4P G:5 , HOH G:2002 , HOH G:2010BINDING SITE FOR RESIDUE IPA G1014
06AC6SOFTWAREIPA A:1014 , IPA A:1015 , HOH A:2002 , HOH A:2007 , HOH A:2009 , HOH A:2010 , HOH A:2012 , GHP B:1 , D3P B:2 , VAL B:3 , D3P B:4 , D4P B:5 , D3P B:6 , D4P B:7 , D3P B:8 , VAL B:9 , D3P B:10 , D4P B:11 , PHE B:12 , ASP B:13 , HOH B:2010 , HOH B:2013 , HOH B:2015 , GHP C:1 , D3P C:2 , VAL C:3 , D3P C:4 , D4P C:5 , GHP D:1BINDING SITE FOR CHAIN A OF FEGLYMYCIN
07AC7SOFTWAREGHP A:1 , D3P A:2 , VAL A:3 , D3P A:4 , D4P A:5 , D3P A:6 , D4P A:7 , D3P A:8 , VAL A:9 , D3P A:10 , D4P A:11 , PHE A:12 , ASP A:13 , HOH A:2012 , HOH B:2001 , HOH B:2003 , HOH B:2004 , HOH B:2005 , HOH B:2007 , HOH B:2008 , HOH B:2010 , HOH B:2011 , HOH B:2012 , HOH B:2013 , HOH B:2014 , HOH B:2015 , HOH B:2016 , PHE C:12 , GHP D:1 , D3P D:2 , VAL D:3 , D4P D:5 , HOH D:2002 , FLC G:1015BINDING SITE FOR CHAIN B OF FEGLYMYCIN
08AC8SOFTWAREGHP A:1 , D3P A:2 , VAL A:3 , D3P A:4 , D4P A:5 , IPA A:1014 , IPA A:1015 , HOH A:2013 , GHP B:1 , HOH C:2001 , HOH C:2002 , HOH C:2004 , HOH C:2006 , HOH C:2007 , HOH C:2009 , HOH C:2010 , HOH C:2011 , HOH C:2012 , GHP D:1 , D3P D:2 , VAL D:3 , D3P D:4 , D4P D:5 , D3P D:6 , D4P D:7 , D3P D:8 , VAL D:9 , D3P D:10 , D4P D:11 , PHE D:12 , ASP D:13 , HOH D:2007 , HOH D:2009BINDING SITE FOR CHAIN C OF FEGLYMYCIN
09AC9SOFTWAREPHE A:12 , GHP B:1 , D3P B:2 , VAL B:3 , D4P B:5 , HOH B:2001 , HOH B:2004 , GHP C:1 , D3P C:2 , VAL C:3 , D3P C:4 , D4P C:5 , D3P C:6 , D4P C:7 , D3P C:8 , VAL C:9 , D3P C:10 , D4P C:11 , PHE C:12 , ASP C:13 , HOH C:2009 , HOH C:2012 , HOH D:2002 , HOH D:2004 , HOH D:2005 , HOH D:2007 , HOH D:2008 , HOH D:2009BINDING SITE FOR CHAIN D OF FEGLYMYCIN
10BC1SOFTWAREIPA E:1014 , HOH E:2001 , HOH E:2003 , HOH E:2004 , HOH E:2007 , HOH E:2008 , HOH E:2009 , HOH E:2012 , HOH E:2014 , HOH E:2015 , HOH E:2016 , GHP F:1 , D3P F:2 , VAL F:3 , D3P F:4 , D4P F:5 , D3P F:6 , D4P F:7 , D3P F:8 , VAL F:9 , D3P F:10 , D4P F:11 , PHE F:12 , ASP F:13 , HOH F:2008 , HOH F:2010 , HOH F:2011 , GHP G:1 , D3P G:2 , VAL G:3 , D3P G:4 , D4P G:5 , IPA G:1014 , GHP H:1BINDING SITE FOR CHAIN E OF FEGLYMYCIN
11BC2SOFTWAREGHP E:1 , D3P E:2 , VAL E:3 , D3P E:4 , D4P E:5 , D3P E:6 , D4P E:7 , D3P E:8 , VAL E:9 , D3P E:10 , D4P E:11 , PHE E:12 , ASP E:13 , IPA E:1014 , HOH E:2015 , HOH F:2001 , HOH F:2003 , HOH F:2004 , HOH F:2006 , HOH F:2007 , HOH F:2008 , HOH F:2009 , HOH F:2010 , HOH F:2011 , PHE G:12 , GHP H:1 , D3P H:2 , VAL H:3 , D4P H:5 , HOH H:2003BINDING SITE FOR CHAIN F OF FEGLYMYCIN
12BC3SOFTWAREGHP E:1 , D3P E:2 , VAL E:3 , D3P E:4 , D4P E:5 , GHP F:1 , IPA G:1014 , HOH G:2001 , HOH G:2002 , HOH G:2007 , HOH G:2008 , HOH G:2009 , GHP H:1 , D3P H:2 , VAL H:3 , D3P H:4 , D4P H:5 , D3P H:6 , D4P H:7 , D3P H:8 , VAL H:9 , D3P H:10 , D4P H:11 , PHE H:12 , ASP H:13 , HOH H:2001 , HOH H:2011 , HOH H:2017BINDING SITE FOR CHAIN G OF FEGLYMYCIN
13BC4SOFTWAREPHE E:12 , GHP F:1 , D3P F:2 , VAL F:3 , D4P F:5 , HOH F:2001 , GHP G:1 , D3P G:2 , VAL G:3 , D3P G:4 , D4P G:5 , D3P G:6 , D4P G:7 , D3P G:8 , VAL G:9 , D3P G:10 , D4P G:11 , PHE G:12 , ASP G:13 , FLC G:1015 , HOH G:2008 , HOH G:2009 , HOH H:2001 , HOH H:2002 , HOH H:2003 , HOH H:2005 , HOH H:2006 , HOH H:2008 , HOH H:2009 , HOH H:2010 , HOH H:2011 , HOH H:2012 , HOH H:2013 , HOH H:2016 , HOH H:2017BINDING SITE FOR CHAIN H OF FEGLYMYCIN

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1W7R)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1W7R)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1W7R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1W7R)

(-) Exons   (0, 0)

(no "Exon" information available for 1W7R)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r A  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain B from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r B  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain C from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r C  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain D from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r D  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain E from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r E  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain F from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r F  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain G from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r G  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P


Chain H from PDB  Type:PROTEIN  Length:13
                                            
               SCOP domains ------------- SCOP domains
               CATH domains ------------- CATH domains
               Pfam domains ------------- Pfam domains
         Sec.struct. author .eeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------- SAPs(SNPs)
                    PROSITE ------------- PROSITE
                 Transcript ------------- Transcript
                  1w7r H  1 xxVxxxxxVxxFD 13
                            || |||||10|  
                            || ||||| 11-D4P
                            1-GHP||| |   
                             2-D3P|| |   
                               4-D3P |   
                                5-D4P|   
                                 6-D3P   
                                  7-D4P  
                                   8-D3P 
                                    10-D3P
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1W7R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1W7R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1W7R)

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  1w7r
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 Related Entries

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(-) Related Entries Specified in the PDB File

1w7q CRYSTAL STRUCTURE OF FEGLYMYCIN. SPACE GROUP P65