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1VRQ
Biol. Unit 1
Info
Asym.Unit (290 KB)
Biol.Unit 1 (282 KB)
Biol.Unit 2 (556 KB)
Biol.Unit 3 (557 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF HETEROTETRAMERIC SARCOSINE OXIDASE FROM CORYNEBACTERIUM SP. U-96 IN COMPLEX WITH FOLINIC ACID
Authors
:
K. Ida, T. Moriguchi, H. Suzuki
Date
:
27 Apr 05 (Deposition) - 05 Jul 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.20
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: A,B,C,D (2x)
Biol. Unit 3: A,B,C,D (2x)
Keywords
:
Heterotetrameric Sarcosine Oxidase, Flavoenzyme, Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
K. Ida, T. Moriguchi, H. Suzuki
Crystal Structure Of Heterotetrameric Sarcosine Oxidase Fro Corynebacterium Sp. U-96
Biochem. Biophys. Res. Commun. V. 333 359 2005
[
close entry info
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Hetero Components
(6, 18)
Info
All Hetero Components
1a: N,N-DIMETHYLGLYCINE (DMGa)
2a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
3a: FLAVIN MONONUCLEOTIDE (FMNa)
4a: FOLINIC ACID (FONa)
5a: NICOTINAMIDE-ADENINE-DINUCLEOTIDE (NADa)
6a: SULFATE ION (SO4a)
6b: SULFATE ION (SO4b)
6c: SULFATE ION (SO4c)
6d: SULFATE ION (SO4d)
6e: SULFATE ION (SO4e)
6f: SULFATE ION (SO4f)
6g: SULFATE ION (SO4g)
6h: SULFATE ION (SO4h)
6i: SULFATE ION (SO4i)
6j: SULFATE ION (SO4j)
6k: SULFATE ION (SO4k)
6l: SULFATE ION (SO4l)
6m: SULFATE ION (SO4m)
7a: ZINC ION (ZNa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DMG
1
Ligand/Ion
N,N-DIMETHYLGLYCINE
2
FAD
1
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
3
FMN
1
Ligand/Ion
FLAVIN MONONUCLEOTIDE
4
FON
1
Ligand/Ion
FOLINIC ACID
5
NAD
1
Ligand/Ion
NICOTINAMIDE-ADENINE-DINUCLEOTIDE
6
SO4
13
Ligand/Ion
SULFATE ION
7
ZN
-1
Ligand/Ion
ZINC ION
[
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Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
CYS D:6 , CYS D:9 , HIS D:59 , CYS D:63
BINDING SITE FOR RESIDUE ZN D 1006
02
AC2
SOFTWARE
GLN A:30 , ALA C:25 , GLY C:26 , GLU C:27 , ARG C:28
BINDING SITE FOR RESIDUE SO4 C 2001
03
AC3
SOFTWARE
ARG A:574 , ALA A:696 , ALA A:697 , THR A:722 , HOH A:3682 , HOH A:4041 , HOH A:4141 , ARG C:176
BINDING SITE FOR RESIDUE SO4 A 2002
04
AC4
SOFTWARE
LYS A:446 , ILE A:447 , HOH A:3533
BINDING SITE FOR RESIDUE SO4 A 2003
05
AC5
SOFTWARE
ASN B:13 , ASN B:14 , HOH B:3320
BINDING SITE FOR RESIDUE SO4 B 2004
06
AC6
SOFTWARE
THR A:709 , HIS D:24 , ASN D:68 , ALA D:84 , GLY D:85 , HOH D:3297 , HOH D:3794 , HOH D:4008
BINDING SITE FOR RESIDUE SO4 D 2005
07
AC7
SOFTWARE
HIS B:7 , LYS B:171 , HIS B:174 , LYS B:277 , HOH B:3358 , HOH B:3710 , HOH B:3942 , HOH B:4011
BINDING SITE FOR RESIDUE SO4 B 2006
08
AC8
SOFTWARE
ASN A:651 , GLY A:652 , SER A:847 , LEU A:849 , HOH A:3539 , HOH A:3781 , HOH A:3807
BINDING SITE FOR RESIDUE SO4 A 2007
09
AC9
SOFTWARE
ARG A:929 , ASN A:930
BINDING SITE FOR RESIDUE SO4 A 2008
10
BC1
SOFTWARE
GLN A:217 , ARG A:219 , HOH A:3107 , VAL C:199
BINDING SITE FOR RESIDUE SO4 A 2009
11
BC2
SOFTWARE
SER A:1 , LYS A:285 , LEU A:349 , SER A:350 , ALA A:371 , ASP A:372 , HOH A:4103
BINDING SITE FOR RESIDUE SO4 A 2010
12
BC3
SOFTWARE
GLN A:489 , ASP A:493 , TYR A:511 , THR A:512 , HIS B:7
BINDING SITE FOR RESIDUE SO4 A 2011
13
BC4
SOFTWARE
ARG C:119 , THR C:153 , SER D:60 , GLY D:62 , HOH D:3782
BINDING SITE FOR RESIDUE SO4 D 2012
14
BC5
SOFTWARE
SER A:7 , ALA A:8
BINDING SITE FOR RESIDUE SO4 A 2013
15
BC6
SOFTWARE
VAL B:26 , GLY B:27 , GLY B:29 , GLY B:30 , HIS B:31 , LEU B:51 , GLU B:52 , LYS B:53 , GLY B:59 , ASN B:60 , MET B:61 , ARG B:63 , ASN B:64 , THR B:65 , THR B:66 , ILE B:67 , CYS B:194 , VAL B:196 , ALA B:224 , GLY B:225 , ALA B:226 , HIS B:228 , LEU B:232 , LEU B:247 , ALA B:249 , GLY B:353 , THR B:354 , GLY B:355 , GLY B:356 , PHE B:357 , LYS B:358 , DMG B:1005 , HOH B:3007 , HOH B:3159 , HOH B:3577 , HOH B:3698
BINDING SITE FOR RESIDUE FAD B 1001
16
BC7
SOFTWARE
GLY A:134 , GLY A:136 , PRO A:137 , ALA A:138 , ASP A:157 , GLU A:158 , ARG A:159 , GLY A:164 , THR A:165 , THR A:202 , VAL A:204 , ALA A:247 , THR A:248 , ALA A:249 , SER A:294 , PHE A:380 , GLY A:416 , ALA A:417 , LEU A:422 , ASP A:423 , THR A:424 , TYR A:553 , HOH A:3003 , HOH A:3005 , HOH A:3019 , HOH A:3039 , HOH A:3191 , HOH A:3212 , HOH A:3540
BINDING SITE FOR RESIDUE NAD A 1002
17
BC8
SOFTWARE
LEU A:631 , TYR A:663 , ASP A:676 , GLY A:677 , HIS A:690 , THR A:691 , ILE A:774 , SER A:775 , PHE A:776 , GLU A:783 , LYS A:822 , PHE A:824 , TRP A:844
BINDING SITE FOR RESIDUE FON A 1003
18
BC9
SOFTWARE
LYS A:509 , ARG A:510 , THR A:516 , GLN A:520 , THR A:548 , ARG A:550 , ALA B:62 , ARG B:63 , ASN B:64 , THR B:66 , HIS B:172 , VAL B:251 , LYS B:277 , GLU B:279 , ARG B:322 , TRP B:324 , HOH B:3042 , HOH B:3059 , HOH B:3084 , HOH B:3295 , HOH B:3449 , HOH B:3520
BINDING SITE FOR RESIDUE FMN B 1004
19
CC1
SOFTWARE
THR B:65 , ILE B:67 , ARG B:69 , MET B:264 , THR B:354 , LYS B:358 , ALA B:401 , FAD B:1001 , HOH B:3224
BINDING SITE FOR RESIDUE DMG B 1005
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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[
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Exons
(0, 0)
Info
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(0, 0)
Info
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
[
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Pfam Domains
(7, 7)
Info
all PFAM domains
1a: PFAM_GCV_T_1vrqA01 (A:625-845)
2a: PFAM_SoxG_1vrqC01 (C:44-193)
3a: PFAM_Fer2_4_1vrqA02 (A:19-107)
4a: PFAM_DAO_1vrqB01 (B:22-370)
5a: PFAM_FAD_oxidored_1vrqA03 (A:129-222)
6a: PFAM_GCV_T_C_1vrqA04 (A:850-952)
7a: PFAM_SoxD_1vrqD01 (D:3-86)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
FBD
(14)
Family
:
GCV_T
(12)
Corynebacterium sp. U-96
(2)
1a
GCV_T-1vrqA01
A:625-845
Family
:
SoxG
(2)
Corynebacterium sp. U-96
(2)
2a
SoxG-1vrqC01
C:44-193
Clan
:
Fer2
(69)
Family
:
Fer2_4
(3)
Corynebacterium sp. U-96
(2)
3a
Fer2_4-1vrqA02
A:19-107
Clan
:
NADP_Rossmann
(1239)
Family
:
DAO
(25)
Corynebacterium sp. U-96
(2)
4a
DAO-1vrqB01
B:22-370
Family
:
FAD_oxidored
(2)
Corynebacterium sp. U-96
(2)
5a
FAD_oxidored-1vrqA03
A:129-222
Clan
:
no clan defined [family: GCV_T_C]
(10)
Family
:
GCV_T_C
(10)
Corynebacterium sp. U-96
(2)
6a
GCV_T_C-1vrqA04
A:850-952
Clan
:
no clan defined [family: SoxD]
(2)
Family
:
SoxD
(2)
Corynebacterium sp. U-96
(2)
7a
SoxD-1vrqD01
D:3-86
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