1VQZ - JenaLib

Title :   CRYSTAL STRUCTURE OF A PUTATIVE LIPOATE-PROTEIN LIGASE A (SP_1160) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 1.99 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   21 Jan 05 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym./Biol. Unit : A

Keywords :   Class Ii Aars And Biotin Synthetases Fold, Sufe/Nifu Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Ligase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipoate-Protein Ligase (Np_345629. 1) From Streptococcus Pneumoniae Tigr4 At 1. 99 A Resolution
To Be Published
PubMed: search

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 22)

Sites (18, 18)

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:3 , GLU A:170 , LYS A:206 , ARG A:250 , GLY A:251 , HOH A:612	BINDING SITE FOR RESIDUE UNL A 400
02	AC2	SOFTWARE	ASN A:54 , ARG A:55 , ASP A:56	BINDING SITE FOR RESIDUE EDO A 401
03	AC3	SOFTWARE	ARG A:45 , HIS A:46 , LYS A:274 , ILE A:275 , TYR A:276 , EDO A:407 , EDO A:417 , HOH A:490	BINDING SITE FOR RESIDUE EDO A 402
04	AC4	SOFTWARE	ASP A:199 , LEU A:202 , GLU A:203 , GLY A:329 , HOH A:578	BINDING SITE FOR RESIDUE EDO A 403
05	AC5	SOFTWARE	LYS A:23 , HIS A:24 , ASN A:186 , GLU A:187 , PRO A:189 , EDO A:416 , HOH A:519 , HOH A:649 , HOH A:662	BINDING SITE FOR RESIDUE EDO A 404
06	AC6	SOFTWARE	THR A:235 , TRP A:236 , ASP A:237 , LYS A:307 , ARG A:320	BINDING SITE FOR RESIDUE EDO A 405
07	AC7	SOFTWARE	LYS A:232 , EDO A:412 , HOH A:596	BINDING SITE FOR RESIDUE EDO A 406
08	AC8	SOFTWARE	ASP A:237 , TRP A:238 , TYR A:240 , EDO A:402 , EDO A:417 , HOH A:602	BINDING SITE FOR RESIDUE EDO A 407
09	AC9	SOFTWARE	ASN A:48 , ILE A:50 , SER A:243 , PHE A:262 , TYR A:276 , HOH A:536	BINDING SITE FOR RESIDUE EDO A 408
10	BC1	SOFTWARE	ARG A:68 , VAL A:75 , GLY A:147 , EDO A:410 , HOH A:441 , HOH A:450 , HOH A:624	BINDING SITE FOR RESIDUE EDO A 409
11	BC2	SOFTWARE	GLU A:18 , HIS A:77 , HIS A:146 , EDO A:409 , HOH A:426 , HOH A:441 , HOH A:450	BINDING SITE FOR RESIDUE EDO A 410
12	BC3	SOFTWARE	HIS A:7 , ASN A:9 , ILE A:36 , ARG A:198 , HOH A:676	BINDING SITE FOR RESIDUE EDO A 411
13	BC4	SOFTWARE	GLU A:19 , LYS A:23 , HIS A:24 , ILE A:228 , LYS A:232 , EDO A:406 , HOH A:649 , HOH A:650	BINDING SITE FOR RESIDUE EDO A 412
14	BC5	SOFTWARE	LYS A:196 , ASP A:199 , GLU A:203 , GLY A:329 , HOH A:655	BINDING SITE FOR RESIDUE EDO A 413
15	BC6	SOFTWARE	ASN A:122 , ASN A:134 , ALA A:135 , GLN A:136 , PHE A:280	BINDING SITE FOR RESIDUE EDO A 414
16	BC7	SOFTWARE	ILE A:50 , ARG A:55 , TYR A:240 , HOH A:517 , HOH A:547 , HOH A:700	BINDING SITE FOR RESIDUE EDO A 415
17	BC8	SOFTWARE	LYS A:129 , GLU A:187 , EDO A:404	BINDING SITE FOR RESIDUE EDO A 416
18	BC9	SOFTWARE	ARG A:45 , HIS A:46 , ASP A:284 , EDO A:402 , EDO A:407 , HOH A:467 , HOH A:490 , HOH A:673	BINDING SITE FOR RESIDUE EDO A 417

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
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Chain A from PDB  Type:PROTEIN  Length:330
 aligned with A0A0H2UQ30_S | A0A0H2UQ30 from UniProtKB/TrEMBL  Length:329

    Alignment length:330
                             1                                                                                                                                                                                                                                                                                                                                        
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329
         A0A0H2UQ30_S     - -MKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQAYINGRIMHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYMKKEYPEMTEYVFSEEELAEINRIKDTKFGTWDWNYGKSPEFNVRRGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGISREEIAEAVVG 329
               SCOP domains -d1vqza2 A:1-241 LplA-like protein SP1160, N-terminal domain                                                                                                                                                                                      d1vqza1 A:242-329 LplA-like protein SP1160, C-terminal domain                            SCOP domains
               CATH domains 1vqzA01 A:0-241 putative lipoate-protein ligase, domain 1                                                                                                                                                                                         1vqzA02 A:242-329  [code=3.30.390.50, no name defined]                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee....hhhhhhhhhhhhhhhh....eeeeee....eeee....hhhhh.hhhhhhhhh.eeee.......eee...eeeeeeeee.......hhhhhhhhhhhhhhhh...eeee...eeee..eeeeeeeeeee..eeeeeeeee.....hhhhhhh.......ee...........hhhhh.....hhhhhhhhhhhhhhhhh...ee...hhhhhhhhhhhhhhh..hhhhhh.......eeeeeee..eeeeeeeeee..eeeeeeeee.......hhhhhhhhh....hhhhhhhhhhhhhhhhh....hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1vqz A   0 HmKYIINHSNDTAFNIALEEYAFKHLLDEDQIFLLWINKPSIIVGRHQNTIEEINRDYVRENGIEVVRRISGGGAVYHDLNNLNYTIISKEDENKAFDFKSFSTPVINTLAQLGVKAEFTGRNDLEIDGKKFCGNAQAYINGRImHHGCLLFDVDLSVLANALKVSKDKFESKGVKSVRARVTNIINELPKKITVEKFRDLLLEYmKKEYPEmTEYVFSEEELAEINRIKDTKFGTWDWNYGKSPEFNVRRGIKFTSGKVEVFANVTESKIQDIKIYGDFFGIEDVAAVEDVLRGVKYEREDVLKALKTIDITRYFAGISREEIAEAVVG 329
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139    |  149       159       169       179       189       199     | 209  |    219       229       239       249       259       269       279       289       299       309       319       329
                             |                                                                                                                                            144-MSE                                                      205-MSE  |                                                                                                                     
                             1-MSE                                                                                                                                                                                                            212-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (2, 2)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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