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1VQZ
Asym. Unit
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Asym.Unit (68 KB)
Biol.Unit 1 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A PUTATIVE LIPOATE-PROTEIN LIGASE A (SP_1160) FROM STREPTOCOCCUS PNEUMONIAE TIGR4 AT 1.99 A RESOLUTION
Authors
:
Joint Center For Structural Genomics (Jcsg)
Date
:
21 Jan 05 (Deposition) - 15 Feb 05 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.99
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Class Ii Aars And Biotin Synthetases Fold, Sufe/Nifu Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Ligase
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Lipoate-Protein Ligase (Np_345629. 1) From Streptococcus Pneumoniae Tigr4 At 1. 99 A Resolution
To Be Published
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Hetero Components
(3, 22)
Info
All Hetero Components
1a: 1,2-ETHANEDIOL (EDOa)
1b: 1,2-ETHANEDIOL (EDOb)
1c: 1,2-ETHANEDIOL (EDOc)
1d: 1,2-ETHANEDIOL (EDOd)
1e: 1,2-ETHANEDIOL (EDOe)
1f: 1,2-ETHANEDIOL (EDOf)
1g: 1,2-ETHANEDIOL (EDOg)
1h: 1,2-ETHANEDIOL (EDOh)
1i: 1,2-ETHANEDIOL (EDOi)
1j: 1,2-ETHANEDIOL (EDOj)
1k: 1,2-ETHANEDIOL (EDOk)
1l: 1,2-ETHANEDIOL (EDOl)
1m: 1,2-ETHANEDIOL (EDOm)
1n: 1,2-ETHANEDIOL (EDOn)
1o: 1,2-ETHANEDIOL (EDOo)
1p: 1,2-ETHANEDIOL (EDOp)
1q: 1,2-ETHANEDIOL (EDOq)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
3a: UNKNOWN LIGAND (UNLa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
EDO
17
Ligand/Ion
1,2-ETHANEDIOL
2
MSE
4
Mod. Amino Acid
SELENOMETHIONINE
3
UNL
1
Ligand/Ion
UNKNOWN LIGAND
[
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Sites
(18, 18)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:3 , GLU A:170 , LYS A:206 , ARG A:250 , GLY A:251 , HOH A:612
BINDING SITE FOR RESIDUE UNL A 400
02
AC2
SOFTWARE
ASN A:54 , ARG A:55 , ASP A:56
BINDING SITE FOR RESIDUE EDO A 401
03
AC3
SOFTWARE
ARG A:45 , HIS A:46 , LYS A:274 , ILE A:275 , TYR A:276 , EDO A:407 , EDO A:417 , HOH A:490
BINDING SITE FOR RESIDUE EDO A 402
04
AC4
SOFTWARE
ASP A:199 , LEU A:202 , GLU A:203 , GLY A:329 , HOH A:578
BINDING SITE FOR RESIDUE EDO A 403
05
AC5
SOFTWARE
LYS A:23 , HIS A:24 , ASN A:186 , GLU A:187 , PRO A:189 , EDO A:416 , HOH A:519 , HOH A:649 , HOH A:662
BINDING SITE FOR RESIDUE EDO A 404
06
AC6
SOFTWARE
THR A:235 , TRP A:236 , ASP A:237 , LYS A:307 , ARG A:320
BINDING SITE FOR RESIDUE EDO A 405
07
AC7
SOFTWARE
LYS A:232 , EDO A:412 , HOH A:596
BINDING SITE FOR RESIDUE EDO A 406
08
AC8
SOFTWARE
ASP A:237 , TRP A:238 , TYR A:240 , EDO A:402 , EDO A:417 , HOH A:602
BINDING SITE FOR RESIDUE EDO A 407
09
AC9
SOFTWARE
ASN A:48 , ILE A:50 , SER A:243 , PHE A:262 , TYR A:276 , HOH A:536
BINDING SITE FOR RESIDUE EDO A 408
10
BC1
SOFTWARE
ARG A:68 , VAL A:75 , GLY A:147 , EDO A:410 , HOH A:441 , HOH A:450 , HOH A:624
BINDING SITE FOR RESIDUE EDO A 409
11
BC2
SOFTWARE
GLU A:18 , HIS A:77 , HIS A:146 , EDO A:409 , HOH A:426 , HOH A:441 , HOH A:450
BINDING SITE FOR RESIDUE EDO A 410
12
BC3
SOFTWARE
HIS A:7 , ASN A:9 , ILE A:36 , ARG A:198 , HOH A:676
BINDING SITE FOR RESIDUE EDO A 411
13
BC4
SOFTWARE
GLU A:19 , LYS A:23 , HIS A:24 , ILE A:228 , LYS A:232 , EDO A:406 , HOH A:649 , HOH A:650
BINDING SITE FOR RESIDUE EDO A 412
14
BC5
SOFTWARE
LYS A:196 , ASP A:199 , GLU A:203 , GLY A:329 , HOH A:655
BINDING SITE FOR RESIDUE EDO A 413
15
BC6
SOFTWARE
ASN A:122 , ASN A:134 , ALA A:135 , GLN A:136 , PHE A:280
BINDING SITE FOR RESIDUE EDO A 414
16
BC7
SOFTWARE
ILE A:50 , ARG A:55 , TYR A:240 , HOH A:517 , HOH A:547 , HOH A:700
BINDING SITE FOR RESIDUE EDO A 415
17
BC8
SOFTWARE
LYS A:129 , GLU A:187 , EDO A:404
BINDING SITE FOR RESIDUE EDO A 416
18
BC9
SOFTWARE
ARG A:45 , HIS A:46 , ASP A:284 , EDO A:402 , EDO A:407 , HOH A:467 , HOH A:490 , HOH A:673
BINDING SITE FOR RESIDUE EDO A 417
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 2)
Info
All SCOP Domains
1a: SCOP_d1vqza2 (A:1-241)
2a: SCOP_d1vqza1 (A:242-329)
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Protein Domains
(
)
(
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Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Class II aaRS and biotin synthetases
(165)
Superfamily
:
Class II aaRS and biotin synthetases
(165)
Family
:
LplA-like
(14)
Protein domain
:
LplA-like protein SP1160, N-terminal domain
(1)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(1)
1a
d1vqza2
A:1-241
Fold
:
SufE/NifU
(22)
Superfamily
:
SufE/NifU
(22)
Family
:
SP1160 C-terminal domain-like
(5)
Protein domain
:
LplA-like protein SP1160, C-terminal domain
(1)
Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313]
(1)
2a
d1vqza1
A:242-329
[
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CATH Domains
(2, 2)
Info
all CATH domains
1a: CATH_1vqzA02 (A:242-329)
2a: CATH_1vqzA01 (A:0-241)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.50, no name defined]
(22)
Streptococcus pneumoniae tigr4. Organism_taxid: 170187. Strain: tigr4.
(1)
1a
1vqzA02
A:242-329
Architecture
:
Alpha-Beta Complex
(3881)
Topology
:
putative lipoate-protein ligase, domain 1
(7)
Homologous Superfamily
:
putative lipoate-protein ligase, domain 1
(7)
Streptococcus pneumoniae tigr4. Organism_taxid: 170187. Strain: tigr4.
(1)
2a
1vqzA01
A:0-241
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Pfam Domains
(0, 0)
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Sorry, no Info available
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Chain A
Asymmetric Unit 1
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