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(-) Description

Title :  CRYSTAL STRUCTURE OF AN INDIGOIDINE SYNTHASE A (IDGA)-LIKE PROTEIN (TM1464) FROM THERMOTOGA MARITIMA MSB8 AT 1.90 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  09 Jun 04  (Deposition) - 29 Jun 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Biol. Unit 3:  A,B,C,D,E,F  (1x)
Keywords :  Indigoidine Synthase A-Like Fold, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi, Biosynthetic Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Levin, M. D. Miller, R. Schwarzenbacher, D. Mcmullan, P. Abdubek, E. Ambing, T. Biorac, J. Cambell, J. M. Canaves, H. J. Chiu, A. M. Deacon M. Didonato, M. A. Elsliger, A. Godzik, C. Grittini, S. K. Grzechnik, J. Hale, E. Hampton, G. W. Han, J. Haugen, M. Hornsby, L. Jaroszewski, C. Karlak, H. E. Klock, E. Koesema, A. Kreusch, P. Kuhn, S. A. Lesley, A. Morse, K. Moy, E. Nigoghossian, J. Ouyang, R. Page, K. Quijano, R. Reyes, A. Robb, E. Sims, G. Spraggon, R. C. Stevens, H. Van Den Bedem, J. Velasquez, J. Vincent, X. Wang, B. West, G. Wolf, Q. Xu, O. Zagnitko, K. O. Hodgson, J. Wooley, I. A. Wilson
Crystal Structure Of An Indigoidine Synthase A (Inda)-Like Protein (Tm1464) From Thermotoga Maritima At 1. 90 A Resolution Reveals A New Fold.
Proteins V. 59 864 2005
PubMed-ID: 15822122  |  Reference-DOI: 10.1002/PROT.20420

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN TM1464
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TM1464
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 243274
    Other Details: POSSIBLY INVOLVED IN CARBOHYDRATE METABOLISM
    Strain: MSB8

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF
Biological Unit 3 (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 93)

Asymmetric Unit (4, 93)
No.NameCountTypeFull Name
1EDO11Ligand/Ion1,2-ETHANEDIOL
2MN16Ligand/IonMANGANESE (II) ION
3MSE60Mod. Amino AcidSELENOMETHIONINE
4UNL6Ligand/IonUNKNOWN LIGAND
Biological Unit 1 (3, 39)
No.NameCountTypeFull Name
1EDO6Ligand/Ion1,2-ETHANEDIOL
2MN-1Ligand/IonMANGANESE (II) ION
3MSE30Mod. Amino AcidSELENOMETHIONINE
4UNL3Ligand/IonUNKNOWN LIGAND
Biological Unit 2 (3, 38)
No.NameCountTypeFull Name
1EDO5Ligand/Ion1,2-ETHANEDIOL
2MN-1Ligand/IonMANGANESE (II) ION
3MSE30Mod. Amino AcidSELENOMETHIONINE
4UNL3Ligand/IonUNKNOWN LIGAND
Biological Unit 3 (3, 77)
No.NameCountTypeFull Name
1EDO11Ligand/Ion1,2-ETHANEDIOL
2MN-1Ligand/IonMANGANESE (II) ION
3MSE60Mod. Amino AcidSELENOMETHIONINE
4UNL6Ligand/IonUNKNOWN LIGAND

(-) Sites  (33, 33)

Asymmetric Unit (33, 33)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:-4 , HIS A:-2 , GLU C:204 , GLU C:206 , HOH C:612 , HIS E:-5BINDING SITE FOR RESIDUE MN A 300
02AC2SOFTWAREASP A:126 , HOH A:602 , HOH A:605 , HOH A:606 , HOH A:611 , HOH C:604BINDING SITE FOR RESIDUE MN A 400
03AC3SOFTWAREGLU A:204 , GLU A:206 , HOH A:626 , HIS B:-2 , HIS B:-4 , HIS F:-5BINDING SITE FOR RESIDUE MN B 300
04AC4SOFTWAREHOH A:616 , HOH A:636 , ASP B:126 , HOH B:604 , HOH B:607 , HOH B:609BINDING SITE FOR RESIDUE MN B 400
05AC5SOFTWAREGLU B:204 , GLU B:206 , HOH B:614 , HIS C:-2 , HIS C:-4 , HIS D:-5BINDING SITE FOR RESIDUE MN C 300
06AC6SOFTWAREHOH B:613 , ASP C:126 , HOH C:610 , HOH C:614 , HOH C:621 , HOH C:636BINDING SITE FOR RESIDUE MN C 400
07AC7SOFTWAREHIS C:-5 , HIS D:-2 , HIS D:-4 , GLU E:204 , GLU E:206 , HOH E:618BINDING SITE FOR RESIDUE MN D 300
08AC8SOFTWAREASP D:126 , HOH D:603 , HOH D:605 , HOH D:609 , HOH E:604 , HOH E:606BINDING SITE FOR RESIDUE MN D 400
09AC9SOFTWAREHIS A:-5 , HIS E:-2 , HIS E:-4 , GLU F:204 , GLU F:206 , HOH F:605BINDING SITE FOR RESIDUE MN E 300
10BC1SOFTWAREASP E:126 , HOH E:609 , HOH E:611 , HOH E:619 , HOH F:618 , HOH F:623BINDING SITE FOR RESIDUE MN E 400
11BC2SOFTWAREHIS B:-5 , GLU D:204 , GLU D:206 , HOH D:614 , HIS F:-2 , HIS F:-4BINDING SITE FOR RESIDUE MN F 300
12BC3SOFTWAREHOH D:606 , HOH D:607 , ASP F:126 , HOH F:601 , HOH F:602 , HOH F:603BINDING SITE FOR RESIDUE MN F 400
13BC4SOFTWAREGLU C:64 , GLU C:65 , GLU C:68 , HOH C:686 , HOH C:716 , HOH C:722BINDING SITE FOR RESIDUE MN C 401
14BC5SOFTWAREGLU A:229 , HOH A:808 , HOH A:811 , HOH A:818 , GLU F:220BINDING SITE FOR RESIDUE MN A 401
15BC6SOFTWAREGLU C:4 , GLU F:229 , GLU F:233 , HOH F:736 , HOH F:745 , HOH F:748 , HOH F:755BINDING SITE FOR RESIDUE MN F 401
16BC7SOFTWAREHOH D:760 , HOH E:717BINDING SITE FOR RESIDUE MN E 401
17BC8SOFTWAREGLU A:17 , THR A:19 , LYS A:77 , THR A:96 , VAL A:97 , THR A:114 , GLY A:116 , SER A:128 , ASP A:130 , LYS A:147 , HOH A:603 , HOH A:606 , HOH A:608 , HOH A:610 , HOH A:611 , HOH A:612 , HOH A:644 , HOH A:662 , HOH A:790BINDING SITE FOR RESIDUE UNL A 600
18BC9SOFTWAREHOH A:616 , GLU B:17 , THR B:19 , LYS B:77 , THR B:96 , VAL B:97 , THR B:114 , GLY B:116 , SER B:128 , ASP B:130 , LYS B:147 , THR B:245 , EDO B:601 , HOH B:605 , HOH B:609 , HOH B:610 , HOH B:625 , HOH B:642 , HOH B:644BINDING SITE FOR RESIDUE UNL B 600
19CC1SOFTWAREGLU C:17 , THR C:19 , LYS C:77 , THR C:96 , VAL C:97 , THR C:114 , GLY C:116 , SER C:128 , ASP C:130 , LYS C:147 , HOH C:605 , HOH C:614 , HOH C:629 , HOH C:632 , HOH C:636 , HOH C:643 , HOH C:646 , HOH C:654 , HOH C:736BINDING SITE FOR RESIDUE UNL C 600
20CC2SOFTWAREGLU D:17 , THR D:19 , LYS D:77 , THR D:96 , VAL D:97 , THR D:114 , GLY D:116 , SER D:128 , ASP D:130 , LYS D:147 , THR D:245 , HOH D:608 , HOH D:609 , HOH D:612 , HOH D:621 , HOH D:633 , HOH D:644 , HOH D:659 , HOH D:744 , HOH E:604BINDING SITE FOR RESIDUE UNL D 600
21CC3SOFTWAREGLU E:17 , THR E:19 , LYS E:77 , THR E:96 , VAL E:97 , THR E:114 , GLY E:116 , SER E:128 , ASP E:130 , LYS E:147 , HOH E:608 , HOH E:611 , HOH E:616 , HOH E:652 , HOH E:678 , HOH E:693 , HOH E:700 , HOH F:618BINDING SITE FOR RESIDUE UNL E 600
22CC4SOFTWAREHOH D:607 , GLU F:17 , THR F:19 , LYS F:77 , THR F:96 , VAL F:97 , THR F:114 , GLY F:116 , SER F:128 , ASP F:130 , LYS F:147 , HOH F:602 , HOH F:604 , HOH F:608 , HOH F:610 , HOH F:626 , HOH F:644 , HOH F:659BINDING SITE FOR RESIDUE UNL F 600
23CC5SOFTWAREARG D:81 , HOH D:624 , HOH D:632 , LEU E:166 , PRO E:187BINDING SITE FOR RESIDUE EDO D 601
24CC6SOFTWAREHIS C:-2 , HIS C:-5 , HIS D:-2 , HIS D:-5BINDING SITE FOR RESIDUE EDO C 601
25CC7SOFTWAREGLU B:17 , VAL B:20 , THR B:114 , GLY B:115 , GLY B:116 , LYS B:147 , PHE B:177 , ASN B:264 , UNL B:600 , HOH B:697BINDING SITE FOR RESIDUE EDO B 601
26CC8SOFTWARETHR E:132 , SER E:135 , HOH E:708 , HOH E:710 , LEU F:162BINDING SITE FOR RESIDUE EDO E 601
27CC9SOFTWAREPRO B:165 , LEU B:166 , HOH B:627 , HOH B:664 , ARG C:81BINDING SITE FOR RESIDUE EDO B 602
28DC1SOFTWAREHIS A:-5 , HIS A:-2 , HIS A:-4 , HIS E:-2BINDING SITE FOR RESIDUE EDO A 601
29DC2SOFTWAREASP D:76 , VAL D:78 , ILE D:85 , VAL D:86 , HOH D:657 , ARG E:185BINDING SITE FOR RESIDUE EDO D 602
30DC3SOFTWAREVAL D:127 , MSE E:158 , HOH E:610 , HOH E:637BINDING SITE FOR RESIDUE EDO E 602
31DC4SOFTWARELEU E:150 , ASP E:151 , VAL E:152 , GLU E:153 , HOH E:654 , HOH E:696 , HOH E:702BINDING SITE FOR RESIDUE EDO E 603
32DC5SOFTWAREARG C:138 , LYS C:203 , HOH C:730 , LYS E:-7BINDING SITE FOR RESIDUE EDO C 602
33DC6SOFTWAREHIS B:-2 , HIS B:-5 , HOH B:663 , HIS F:-2 , HIS F:-3 , HIS F:-4 , HIS F:-5 , HOH F:704BINDING SITE FOR RESIDUE EDO B 603

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VKM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1VKM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VKM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VKM)

(-) Exons   (0, 0)

(no "Exon" information available for 1VKM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkma_ A: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm A  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE                                                                    


Chain B from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkmb_ B: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm B  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE                                                                    


Chain C from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkmc_ C: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhh......hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm C  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE                                                                    


Chain D from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkmd_ D: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm D  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE                                                                    


Chain E from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkme_ E: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm E  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE                                                                    


Chain F from PDB  Type:PROTEIN  Length:292
 aligned with PSUG_THEMA | Q9X1H5 from UniProtKB/Swiss-Prot  Length:285

    Alignment length:292
                                    1                                                                                                                                                                                                                                                                                           
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282  
           PSUG_THEMA     - --------MIIESRIEKGKPVVGMETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGMSEEELEAMMREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEMSSSRAVLVSSGIKSILDVEATFEMLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESMKEMELEKTLMVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEMTNGRTLKANLALLEENVKLAGEIAVKLKR 284
               SCOP domains d1vkmf_ F: Hypothetical protein TM1464                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------Indigoidine_A-1vkmF01 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (1)
           Pfam domains (2) ---------Indigoidine_A-1vkmF02 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (2)
           Pfam domains (3) ---------Indigoidine_A-1vkmF03 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (3)
           Pfam domains (4) ---------Indigoidine_A-1vkmF04 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (4)
           Pfam domains (5) ---------Indigoidine_A-1vkmF05 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (5)
           Pfam domains (6) ---------Indigoidine_A-1vkmF06 F:2-282                                                                                                                                                                                                                                                            -- Pfam domains (6)
         Sec.struct. author ..........eee.......eeee.hhhhhh..hhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeee..hhhhhhhhhhhh.eeehhhhhhhhhhhh..eeehhhhhhhhhhhh...eee..............hhhhhhhh...eeeee.......hhhhhhhhhhhh...eeee..................ee.hhhhhhhhhhhhhhh....eeeee...hhhhh.hhhhhhhhhhh.....hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vkm F  -7 KIHHHHHHVIIESRIEKGKPVVGmETTVFVHGLPRKEAIELFRRAKEISREKGFQLAVIGILKGKIVAGmSEEELEAmmREGADKVGTREIPIVVAEGKNAATTVSATIFLSRRIGIEVVVTGGTGGVHPGRVDVSQDLTEmSSSRAVLVSSGIKSILDVEATFEmLETLEIPLVGFRTNEFPLFFSRKSGRRVPRIENVEEVLKIYESmKEmELEKTLmVLNPVPEEYEIPHDEIERLLEKIELEVEGKEVTPFLLKKLVEmTNGRTLKANLALLEENVKLAGEIAVKLKR 284
                                     2        12   |    22        32        42        52        62       |72        82        92       102       112       122       132 |     142       152     | 162       172       182       192       202  |    212       222       232       242       252  |    262       272       282  
                                                  16-MSE                                        62-MSE  70-MSE                                                         134-MSE                 158-MSE                                     202-MSE     |                                        255-MSE                         
                                                                                                         71-MSE                                                                                                                               205-MSE  |                                                                        
                                                                                                                                                                                                                                                     212-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VKM)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Indigoidine_A] (1)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (PSUG_THEMA | Q9X1H5)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016798    hydrolase activity, acting on glycosyl bonds    Catalysis of the hydrolysis of any glycosyl bond.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0004730    pseudouridylate synthase activity    Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0046113    nucleobase catabolic process    The chemical reactions and pathways resulting in the breakdown of a nucleobase, a nitrogenous base that is a constituent of a nucleic acid.
    GO:0001522    pseudouridine synthesis    The intramolecular conversion of uridine to pseudouridine within an RNA molecule. This posttranscriptional base modification occurs in tRNA, rRNA, and snRNAs.

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