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(-) Description

Title :  CRYSTAL STRUCTURE OF PURINE PHOSPHORIBOSYLTRANSFERASE FROM PYROCOCCUS HORIKOSHII OT3
 
Authors :  M. Sugahara, N. Kunishima, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date :  23 Mar 04  (Deposition) - 24 May 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Purine Phosphoribosyltransferase, Pyrococcus Horikoshii, Structural Genomics, Riken Structural Genomics/Proteomics Initiative, Rsgi (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sugahara, N. Kunishima
Crystal Structure Of Purine Phosphoribosyltransferase From Pyrococcus Horikoshii Ot3
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PURINE PHOSPHORIBOSYLTRANSFERASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 2.4.2.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET11A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: PYROCOCCUS HORIKOSHII
    Organism Taxid: 53953

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1VDM)

(-) Sites  (0, 0)

(no "Site" information available for 1VDM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1VDM)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Ala A:34 -Arg A:35
2Ala B:34 -Arg B:35
3Ala C:34 -Arg C:35
4Ala D:34 -Arg D:35
5Ala E:34 -Arg E:35
6Ala F:34 -Arg F:35
7Ala G:34 -Arg G:35
8Ala H:34 -Arg H:35
9Ala I:34 -Arg I:35
10Ala J:34 -Arg J:35
11Ala K:34 -Arg K:35
12Ala L:34 -Arg L:35

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1VDM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1VDM)

(-) Exons   (0, 0)

(no "Exon" information available for 1VDM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:151
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
               SCOP domains d1vdma1 A:1-153 Pprobable purine phosphoribosyltransferase PH00  95                                                                                       SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeee....--......eeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee............ee...eee........ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm A   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKG--ERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
                                    10        20        30        40        50        60  |  |  70        80        90       100       110       120       130       140       150   
                                                                                         63 66                                                                                       


Chain B from PDB  Type:PROTEIN  Length:149
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
               SCOP domains d1vdmb_ B: Pprobable purine phosphoribosyltransferase PH0095                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee..----..eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.........ee.ee...eee........ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm B   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKG----GEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
                                    10        20        30        40        50        60  |    |70        80        90       100       110       120       130       140       150   
                                                                                         63   68                                                                                     


Chain C from PDB  Type:PROTEIN  Length:143
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmc_ C: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhh....eeeeeee.---------..eeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee............ee...eee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm C   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKF---------KPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
                                                                                      60        70                                                                                  


Chain D from PDB  Type:PROTEIN  Length:147
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmd_ D: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee.-----..eeeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.........ee.ee...eee........ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm D   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYK-----GEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60 |     |70        80        90       100       110       120       130       140       150  
                                                                                        62    68                                                                                    


Chain E from PDB  Type:PROTEIN  Length:149
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
               SCOP domains d1vdme_ E: Pprobable purine phosphoribosyltransferase PH0095                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee...----.eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.........ee.ee...eee............ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm E   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGI----EKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
                                    10        20        30        40        50        60   |    70        80        90       100       110       120       130       140       150   
                                                                                          64   69                                                                                    


Chain F from PDB  Type:PROTEIN  Length:150
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmf_ F: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhh....eeeeeeeeee...--.eeeeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.........ee.ee...eee........ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm F   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGID--GEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60    |  |70        80        90       100       110       120       130       140       150  
                                                                                           65 68                                                                                    


Chain G from PDB  Type:PROTEIN  Length:152
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmg_ G: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhhh....eeeeeeeee........eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee............ee...eee........ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm G   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  


Chain H from PDB  Type:PROTEIN  Length:149
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
               SCOP domains d1vdmh_ H: Pprobable purine phosphoribosyltransferase PH0095                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhh....eeeeee..hhhhhhhhhhhh....eeeeeeeee.----...eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.........eeeee...eee........ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm H   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYK----RGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
                                    10        20        30        40        50        60 |    | 70        80        90       100       110       120       130       140       150   
                                                                                        62   67                                                                                      


Chain I from PDB  Type:PROTEIN  Length:146
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmi_ I: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee------..eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee............ee...eee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm I   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFY------GEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60|      |70        80        90       100       110       120       130       140       150  
                                                                                       61     68                                                                                    


Chain J from PDB  Type:PROTEIN  Length:147
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmj_ J: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee-----...eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.........ee.ee...eee........ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm J   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFY-----RGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60|     | 70        80        90       100       110       120       130       140       150  
                                                                                       61    67                                                                                     


Chain K from PDB  Type:PROTEIN  Length:146
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:152
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150  
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
               SCOP domains d1vdmk_ K: Pprobable purine phosphoribosyltransferase PH0095                                                                                             SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee.hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhhhhh....eeeeeeeee.------.eeeeee.........eeeeeeeee..hhhhhhhhhhhhh....eeeeeeeee.........ee.ee....ee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm K   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYK------EKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEK 152
                                    10        20        30        40        50        60 |      70        80        90       100       110       120       130       140       150  
                                                                                        62     69                                                                                   


Chain L from PDB  Type:PROTEIN  Length:149
 aligned with O57827_PYRHO | O57827 from UniProtKB/TrEMBL  Length:153

    Alignment length:153
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150   
         O57827_PYRHO     1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
               SCOP domains d1vdml_ L: Pprobable purine phosphoribosyltransferase PH0095                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Pribosyltran-1vdmL01 L:2-120                                                                                           --------------------------------- Pfam domains (1)
           Pfam domains (2) -Pribosyltran-1vdmL02 L:2-120                                                                                           --------------------------------- Pfam domains (2)
           Pfam domains (3) -Pribosyltran-1vdmL03 L:2-120                                                                                           --------------------------------- Pfam domains (3)
           Pfam domains (4) -Pribosyltran-1vdmL04 L:2-120                                                                                           --------------------------------- Pfam domains (4)
           Pfam domains (5) -Pribosyltran-1vdmL05 L:2-120                                                                                           --------------------------------- Pfam domains (5)
           Pfam domains (6) -Pribosyltran-1vdmL06 L:2-120                                                                                           --------------------------------- Pfam domains (6)
           Pfam domains (7) -Pribosyltran-1vdmL07 L:2-120                                                                                           --------------------------------- Pfam domains (7)
           Pfam domains (8) -Pribosyltran-1vdmL08 L:2-120                                                                                           --------------------------------- Pfam domains (8)
           Pfam domains (9) -Pribosyltran-1vdmL09 L:2-120                                                                                           --------------------------------- Pfam domains (9)
          Pfam domains (10) -Pribosyltran-1vdmL10 L:2-120                                                                                           --------------------------------- Pfam domains (10)
          Pfam domains (11) -Pribosyltran-1vdmL11 L:2-120                                                                                           --------------------------------- Pfam domains (11)
          Pfam domains (12) -Pribosyltran-1vdmL12 L:2-120                                                                                           --------------------------------- Pfam domains (12)
         Sec.struct. author ..eee.hhhhhhhhhhhhhhhhh.....eeeee...hhhhhhhhhhhh....eeeeeeeee..----..eeeeee.........eeeeeeeee..hhhhhhhhhhhhhh...eeeeeeeee.........ee.ee...eee........ee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1vdm L   1 MDKVYLTWWQVDRAIFALAEKLREYKPDVIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKG----GEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKEIKIACLAMKPWTSVVPDYYVFRTEKWIVFPWEEFPVIEKE 153
                                    10        20        30        40        50        60  |    |70        80        90       100       110       120       130       140       150   
                                                                                         63   68
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1VDM)

(-) Pfam Domains  (1, 12)

Asymmetric/Biological Unit
(-)
Clan: PRTase-like (59)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (O57827_PYRHO | O57827)
molecular function
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
    GO:0016757    transferase activity, transferring glycosyl groups    Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
    GO:0009116    nucleoside metabolic process    The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1vdm)
 
  Sites
(no "Sites" information available for 1vdm)
 
  Cis Peptide Bonds
    Ala A:34 - Arg A:35   [ RasMol ]  
    Ala B:34 - Arg B:35   [ RasMol ]  
    Ala C:34 - Arg C:35   [ RasMol ]  
    Ala D:34 - Arg D:35   [ RasMol ]  
    Ala E:34 - Arg E:35   [ RasMol ]  
    Ala F:34 - Arg F:35   [ RasMol ]  
    Ala G:34 - Arg G:35   [ RasMol ]  
    Ala H:34 - Arg H:35   [ RasMol ]  
    Ala I:34 - Arg I:35   [ RasMol ]  
    Ala J:34 - Arg J:35   [ RasMol ]  
    Ala K:34 - Arg K:35   [ RasMol ]  
    Ala L:34 - Arg L:35   [ RasMol ]  
 

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  1vdm
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  O57827_PYRHO | O57827
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  2.4.2.-
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  O57827_PYRHO | O57827
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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