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(-) Description

Title :  HUMAN VASP TETRAMERISATION DOMAIN L352M
 
Authors :  K. Kuhnel, T. Jarchau, E. Wolf, I. Schlichting, U. Walter, A. Wittinghofer, S. V. Strelkov
Date :  21 Nov 03  (Deposition) - 11 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Signaling Protein, Phosphorylation, Actin-Binding, Kinase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  K. Kuhnel, T. Jarchau, E. Wolf, I. Schlichting, U. Walter, A. Wittinghofer, S. V. Strelkov
The Vasp Tetramerization Domain Is A Right-Handed Coiled Coil Based On A 15-Residue Repeat
Proc. Natl. Acad. Sci. Usa V. 101 17027 2004
PubMed-ID: 15569942  |  Reference-DOI: 10.1073/PNAS.0403069101

(-) Compounds

Molecule 1 - VASODILATOR-STIMULATED PHOSPHOPROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentTETRAMERIZATION DOMAIN, RESIDUES 335-379
    MutationYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymVASP

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1USD)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (3, 3)

Asymmetric Unit (3, 3)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002459321ENSE00001375539chr19:46010688-46011034347VASP_HUMAN1-220--
1.2ENST000002459322ENSE00001742627chr19:46020921-46021092172VASP_HUMAN2-59580--
1.3ENST000002459323ENSE00000858230chr19:46021187-46021352166VASP_HUMAN60-115560--
1.4ENST000002459324ENSE00000858231chr19:46024580-4602466485VASP_HUMAN115-143290--
1.5ENST000002459325ENSE00000858232chr19:46025426-4602547550VASP_HUMAN143-160180--
1.6ENST000002459326ENSE00000858233chr19:46025598-46025839242VASP_HUMAN160-240810--
1.7ENST000002459327ENSE00001635606chr19:46025976-46026076101VASP_HUMAN241-274340--
1.8ENST000002459328ENSE00000858235chr19:46026902-4602695352VASP_HUMAN274-291180--
1.9ENST000002459329ENSE00000858236chr19:46027099-4602713537VASP_HUMAN292-304130--
1.10ENST0000024593210ENSE00000858237chr19:46027355-4602740046VASP_HUMAN304-319160--
1.11ENST0000024593211ENSE00000858238chr19:46027828-4602791891VASP_HUMAN319-349311A:338-34912
1.12ENST0000024593212ENSE00000858239chr19:46029204-4602926158VASP_HUMAN350-369201A:350-36920
1.13ENST0000024593213ENSE00001112676chr19:46029398-46030236839VASP_HUMAN369-380121A:369-37911

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:42
 aligned with VASP_HUMAN | P50552 from UniProtKB/Swiss-Prot  Length:380

    Alignment length:42
                                   347       357       367       377  
           VASP_HUMAN   338 SSDYSDLQRVKQELLEEVKKELQKVKEEIIEAFVQELRKRGS 379
               SCOP domains d1usda_ A:                                 SCOP domains
               CATH domains ------------------------------------------ CATH domains
               Pfam domains --VASP_tetra-1usdA01 A:340-379             Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------ PROSITE
           Transcript 1 (1) Exon 1.11   Exon 1.12           ---------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.13   Transcript 1 (2)
                 1usd A 338 SSDYSDLQRVKQELMEEVKKELQKVKEEIIEAFVQELRKRGS 379
                                   347       357       367       377  

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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (1, 1)

Asymmetric Unit

(-) Gene Ontology  (26, 26)

Asymmetric Unit(hide GO term definitions)
Chain A   (VASP_HUMAN | P50552)
molecular function
    GO:0017124    SH3 domain binding    Interacting selectively and non-covalently with a SH3 domain (Src homology 3) of a protein, small protein modules containing approximately 50 amino acid residues found in a great variety of intracellular or membrane-associated proteins.
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0005522    profilin binding    Interacting selectively and non-covalently with profilin, an actin-binding protein that forms a complex with G-actin and prevents it from polymerizing to form F-actin.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0008154    actin polymerization or depolymerization    Assembly or disassembly of actin filaments by the addition or removal of actin monomers from a filament.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0034329    cell junction assembly    A cellular process that results in the aggregation, arrangement and bonding together of a set of components to form a cell junction.
    GO:0001843    neural tube closure    The last step in the formation of the neural tube, where the paired neural folds are brought together and fuse at the dorsal midline.
    GO:0030838    positive regulation of actin filament polymerization    Any process that activates or increases the frequency, rate or extent of actin polymerization.
    GO:0051289    protein homotetramerization    The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005923    bicellular tight junction    An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
    GO:0030054    cell junction    A cellular component that forms a specialized region of connection between two or more cells or between a cell and the extracellular matrix. At a cell junction, anchoring proteins extend through the plasma membrane to link cytoskeletal proteins in one cell to cytoskeletal proteins in neighboring cells or to proteins in the extracellular matrix.
    GO:0042995    cell projection    A prolongation or process extending from a cell, e.g. a flagellum or axon.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0030175    filopodium    Thin, stiff, actin-based protrusion extended by the leading edge of a motile cell such as a crawling fibroblast or amoeba, or an axonal or dendritic growth cone, or a dendritic shaft.
    GO:0031527    filopodium membrane    The portion of the plasma membrane surrounding a filopodium.
    GO:0005925    focal adhesion    Small region on the surface of a cell that anchors the cell to the extracellular matrix and that forms a point of termination of actin filaments.
    GO:0030027    lamellipodium    A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
    GO:0031258    lamellipodium membrane    The portion of the plasma membrane surrounding a lamellipodium.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        VASP_HUMAN | P505521egx 1jng 1use 2pav 2pbd 3chw

(-) Related Entries Specified in the PDB File

1egx SOLUTION STRUCTURE OF THE ENA-VASP HOMOLOGY 1 (EVH1) DOMAINOF HUMAN VASODILATOR- STIMULATED PHOSPHOPROTEIN (VASP)
1jng STRUCTURE OF THE ENA-VASP HOMOLOGY 1 (EVH1) DOMAIN OF HUMANVASODILATOR-STIMULATED PHOSPHOPROTEIN (VASP) IN COMPLEXW ITH SFEFPPPPTEDEL PEPTIDE (THEORETICAL MODEL)
1use HUMAN VASP TETRAMERISATION DOMAIN