1U6R - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   TRANSITION STATE ANALOG COMPLEX OF MUSCLE CREATINE KINASE (R134K) MUTANT

Authors :   J. F. Ohren, M. L. Kundracik, C. L. Borders, P. Edmiston, R. E. Viola

Date :   30 Jul 04 (Deposition) - 02 Aug 05 (Release) - 16 Nov 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym./Biol. Unit : A,B

Keywords :   Creatine Kinase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. F. Ohren, M. L. Kundracik, C. L. Borders Jr, P. Edmiston, R. E. Viola
Structural Asymmetry And Intersubunit Communication In Muscle Creatine Kinase
Acta Crystallogr. , Sect. D V. 63 381 2007
PubMed-ID: 17327675 | Reference-DOI: 10.1107/S0907444906056204

Molecule 1 - CREATINE KINASE, M CHAIN
	Chains	:	A, B
	EC Number	:	2.7.3.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CKM
	Mutation	:	YES
	Organism Common	:	RABBIT
	Organism Scientific	:	ORYCTOLAGUS CUNICULUS
	Organism Taxid	:	9986
	Synonym	:	M-CK

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 6)

No.	Name	Count	Type	Full Name
1	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
2	IOM	1	Ligand/Ion	(DIAMINOMETHYL-METHYL-AMINO)-ACETIC ACID
3	MG	2	Ligand/Ion	MAGNESIUM ION
4	NO3	1	Ligand/Ion	NITRATE ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ADP B:1501 , NO3 B:1701 , HOH B:2217 , HOH B:2218 , HOH B:2219	BINDING SITE FOR RESIDUE MG B 1502
2	AC2	SOFTWARE	ARG B:131 , GLU B:231 , ARG B:235 , ARG B:319 , ADP B:1501 , MG B:1502 , IOM B:1601 , HOH B:2200	BINDING SITE FOR RESIDUE NO3 B 1701
3	AC3	SOFTWARE	ADP A:1801 , HOH A:2174 , HOH A:2233	BINDING SITE FOR RESIDUE MG A 1802
4	AC4	SOFTWARE	SER B:127 , ARG B:129 , ARG B:131 , HIS B:190 , ARG B:235 , MET B:239 , ARG B:291 , GLY B:293 , VAL B:294 , HIS B:295 , ARG B:319 , THR B:321 , GLY B:322 , GLY B:323 , VAL B:324 , ASP B:334 , MG B:1502 , NO3 B:1701 , HOH B:1721 , HOH B:1734 , HOH B:1756 , HOH B:1757 , HOH B:1802 , HOH B:2217 , HOH B:2219	BINDING SITE FOR RESIDUE ADP B 1501
5	AC5	SOFTWARE	THR B:70 , VAL B:71 , LEU B:200 , GLU B:231 , CYS B:282 , ASN B:285 , NO3 B:1701 , HOH B:1707 , HOH B:1754 , HOH B:1763 , HOH B:1777	BINDING SITE FOR RESIDUE IOM B 1601
6	AC6	SOFTWARE	SER A:127 , ARG A:129 , ARG A:131 , ARG A:235 , ARG A:291 , VAL A:294 , HIS A:295 , ARG A:319 , GLY A:322 , GLY A:323 , VAL A:324 , ASP A:334 , MG A:1802 , HOH A:2014 , HOH A:2233 , HOH A:2281	BINDING SITE FOR RESIDUE ADP A 1801

(no "SS Bond" information available for 1U6R)

Asymmetric/Biological Unit

No.	Residues
1	Trp A:210	-	Pro A:211
2	Trp B:210	-	Pro B:211

(no "SAP(SNP)/Variant" information available for 1U6R)

Asymmetric/Biological Unit (3, 6)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	PHOSPHAGEN_KINASE_N	PS51509	Phosphagen kinase N-terminal domain profile.	KCRM_RABIT	11-98	2	A:10-97 B:10-97
2	PHOSPHAGEN_KINASE_C	PS51510	Phosphagen kinase C-terminal domain profile.	KCRM_RABIT	125-367	2	A:124-366 B:124-366
3	PHOSPHAGEN_KINASE	PS00112	Phosphagen kinase active site signature.	KCRM_RABIT	283-289	2	A:282-288 B:282-288

(no "Exon" information available for 1U6R)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:380
 aligned with KCRM_RABIT | P00563 from UniProtKB/Swiss-Prot  Length:381

    Alignment length:380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
           KCRM_RABIT     2 PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDLDPHYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK 381
               SCOP domains d1u6ra1 A:1-101 Creatine kinase, N-domain                                                            d1u6ra2 A:102-380 Creatine kinase, C-terminal domain                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1u6rA01 A:1-101 Transferase Creatine Kinase, Chain A, domain 1                                       --1u6rA02 A:104-380 Creatine Kinase; Chain                                                                                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhh..hhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh.............hhhhh..........eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhh........hhhhhh...........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhhh....ee...ee...hhhhh....eeeeeeehhhhhh..hhhhhhhhhheeee............eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------PHOSPHAGEN_KINASE_N  PDB: A:10-97 UniProt: 11-98                                        --------------------------PHOSPHAGEN_KINASE_C  PDB: A:124-366 UniProt: 125-367                                                                                                                                                                                               -------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHA-------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u6r A   1 PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDLDPHYVLSSRVRTGKSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Chain B from PDB  Type:PROTEIN  Length:380
 aligned with KCRM_RABIT | P00563 from UniProtKB/Swiss-Prot  Length:381

    Alignment length:380
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381
           KCRM_RABIT     2 PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDLDPHYVLSSRVRTGRSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK 381
               SCOP domains d1u6rb1 B:1-101 Creatine kinase, N-domain                                                            d1u6rb2 B:102-380 Creatine kinase, C-terminal domain                                                                                                                                                                                                                                    SCOP domains
               CATH domains 1u6rB01 B:1-101 Transferase Creatine Kinase, Chain A, domain 1                                       --1u6rB02 B:104-380 Creatine Kinase; Chain                                                                                                                                                                                                                                              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhh........hhhhhhhhhhhh................hhhhhhhhhhhhhhhhhh.............hhhhh..........eeeeeeeeee...........hhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhhhhhhh........hhhhhhh..........eeeee....eeeee.....eeeeeeee..hhhhhhhhhhhhhhhhhhhhhhh.....ee...ee...hhhhh....eeeeeee..hhhhh.hhhhhhhhhheeee............eeeeee......hhhhhhhhhhhhhhhhhhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---------PHOSPHAGEN_KINASE_N  PDB: B:10-97 UniProt: 11-98                                        --------------------------PHOSPHAGEN_KINASE_C  PDB: B:124-366 UniProt: 125-367                                                                                                                                                                                               -------------- PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PHOSPHA-------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u6r B   1 PFGNTHNKYKLNYKSEEEYPDLSKHNNHMAKVLTPDLYKKLRDKETPSGFTLDDVIQTGVDNPGHPFIMTVGCVAGDEESYTVFKDLFDPIIQDRHGGFKPTDKHKTDLNHENLKGGDDLDPHYVLSSRVRTGKSIKGYTLPPHCSRGERRAVEKLSVEALNSLTGEFKGKYYPLKSMTEQEQQQLIDDHFLFDKPVSPLLLASGMARDWPDARGIWHNDNKSFLVWVNEEDHLRVISMEKGGNMKEVFRRFCVGLQKIEEIFKKAGHPFMWNEHLGYVLTCPSNLGTGLRGGVHVKLAHLSKHPKFEEILTRLRLQKRGTGGVDTAAVGSVFDISNADRLGSSEVEQVQLVVDGVKLMVEMEKKLEKGQSIDDMIPAQK 380
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Creatine Kinase; Chain A, domain 2 (27)

Homologous Superfamily: Creatine Kinase; Chain (27)

Rabbit (Oryctolagus cuniculus) (2)

1a	1u6rA02	A:104-380
1b	1u6rB02	B:104-380

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Transferase Creatine Kinase; Chain A, domain 1 (26)

Homologous Superfamily: Transferase Creatine Kinase, Chain A, domain 1 (26)

Rabbit (Oryctolagus cuniculus) (2)

2a	1u6rA01	A:1-101
2b	1u6rB01	B:1-101

(no "Pfam Domain" information available for 1U6R)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (KCRM_RABIT | P00563)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004111	creatine kinase activity	Catalysis of the reaction: ATP + creatine = N-phosphocreatine + ADP + 2 H(+).
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016772	transferase activity, transferring phosphorus-containing groups	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to another (acceptor).
biological process
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
	GO:0009408	response to heat	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Trp A:210 - Pro A:211	[ RasMol ]
		Trp B:210 - Pro B:211	[ RasMol ]

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	1u6r
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	KCRM_RABIT \| P00563	:	2crk

1crk	MUSCLE CREATINE KINASE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (3, 6)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (2, 4)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (11, 11)

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Related Entries

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Related Entries Specified in the PDB File