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(-) Description

Title :  SUBSTRATE INTERACTIONS BETWEEN TRYPANOTHIONE REDUCTASE AND N1-GLUTATHIONYLSPERMIDINE DISULPHIDE AT 0.28-NM RESOLUTION
 
Authors :  S. Bailey, W. N. Hunter
Date :  29 Jun 92  (Deposition) - 31 Jan 94  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bailey, K. Smith, A. H. Fairlamb, W. N. Hunter
Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0. 28-Nm Resolution.
Eur. J. Biochem. V. 213 67 1993
PubMed-ID: 8477734  |  Reference-DOI: 10.1111/J.1432-1033.1993.TB17734.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TRYPANOTHIONE REDUCTASE
    Chains: A, B
    EC Number: 1.6.4.8
    Engineered: YES
    Organism Scientific: CRITHIDIA FASCICULATA
    Organism Taxid: 5656

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 12)

Asymmetric/Biological Unit (4, 12)
No.NameCountTypeFull Name
1FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2GSH4Ligand/IonGLUTATHIONE
3NAP2Ligand/IonNADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4SPD4Ligand/IonSPERMIDINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREILE A:10 , GLY A:11 , GLY A:13 , SER A:14 , GLY A:15 , ASP A:35 , LEU A:36 , ALA A:46 , ALA A:47 , GLY A:50 , THR A:51 , CYS A:52 , GLY A:56 , CYS A:57 , LYS A:60 , GLY A:125 , TRP A:126 , GLY A:127 , ALA A:159 , THR A:160 , GLY A:161 , TYR A:198 , ARG A:287 , LEU A:294 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:501 , HOH A:503 , HOH A:516 , HOH A:540 , HOH A:621 , HIS B:461 , PRO B:462BINDING SITE FOR RESIDUE FAD A 493
02AC2SOFTWAREGLY A:195 , GLY A:196 , GLY A:197 , TYR A:198 , TYR A:221 , ARG A:222 , ARG A:228 , PHE A:230 , ILE A:285 , GLY A:286 , ARG A:287 , MET A:333 , CYS A:364 , VAL A:366 , HOH A:634 , HOH A:660 , HOH A:661 , HOH A:668BINDING SITE FOR RESIDUE NAP A 494
03AC3SOFTWARESER A:14 , VAL A:58 , TYR A:110 , THR A:335 , ILE A:339 , SPD A:496 , GSH A:497 , HOH A:537 , HOH A:633 , HOH A:635 , HOH A:636 , HIS B:461 , GLU B:467 , SER B:470 , HOH B:633BINDING SITE FOR RESIDUE GSH A 495
04AC4SOFTWARELEU A:17 , GLU A:18 , TRP A:21 , MET A:113 , GSH A:495BINDING SITE FOR RESIDUE SPD A 496
05AC5SOFTWARELYS A:61 , ILE A:106 , TYR A:110 , GSH A:495 , SPD A:498 , HIS B:461 , PRO B:462 , THR B:463 , GLU B:466 , GLU B:467BINDING SITE FOR RESIDUE GSH A 497
06AC6SOFTWARESER A:109 , GSH A:497BINDING SITE FOR RESIDUE SPD A 498
07AC7SOFTWAREHIS A:461 , GLY B:11 , GLY B:13 , SER B:14 , GLY B:15 , ASP B:35 , ALA B:46 , ALA B:47 , GLY B:50 , THR B:51 , CYS B:52 , VAL B:55 , GLY B:56 , CYS B:57 , LYS B:60 , GLY B:125 , TRP B:126 , GLY B:127 , ALA B:159 , THR B:160 , GLY B:161 , TYR B:198 , ARG B:287 , ARG B:290 , LEU B:294 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , NAP B:494 , HOH B:501 , HOH B:502 , HOH B:505 , HOH B:508 , HOH B:535BINDING SITE FOR RESIDUE FAD B 493
08AC8SOFTWARELEU B:167 , GLY B:195 , GLY B:196 , GLY B:197 , TYR B:198 , ILE B:199 , TYR B:221 , ARG B:222 , ARG B:228 , PHE B:230 , ILE B:285 , GLY B:286 , ARG B:287 , MET B:333 , LEU B:334 , CYS B:364 , ALA B:365 , FAD B:493 , HOH B:628 , HOH B:631 , HOH B:655 , HOH B:665 , HOH B:671 , HOH B:696BINDING SITE FOR RESIDUE NAP B 494
09AC9SOFTWAREHIS A:461 , SER A:470 , SER B:14 , GLU B:18 , TYR B:110 , THR B:335 , ILE B:339 , SPD B:496 , GSH B:497 , HOH B:667BINDING SITE FOR RESIDUE GSH B 495
10BC1SOFTWARELEU B:17 , GLU B:18 , TRP B:21 , MET B:113 , GSH B:495BINDING SITE FOR RESIDUE SPD B 496
11BC2SOFTWAREPHE A:396 , HIS A:461 , PRO A:462 , THR A:463 , SER A:464 , ILE B:106 , TYR B:110 , GSH B:495 , SPD B:498 , HOH B:677BINDING SITE FOR RESIDUE GSH B 497
12BC3SOFTWARESER B:109 , GLY B:112 , GSH B:497 , HOH B:692BINDING SITE FOR RESIDUE SPD B 498

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:57
2B:52 -B:57

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Pro A:42 -Pro A:43
2Ile A:369 -Pro A:370
3His A:461 -Pro A:462
4Pro B:42 -Pro B:43
5Ile B:369 -Pro B:370
6His B:461 -Pro B:462

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_TYTR_CRIFA_001 *Q479ETYTR_CRIFA  ---  ---A/BQ479E
   * ID not provided by source
  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 2)

Asymmetric/Biological Unit (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PYRIDINE_REDOX_1PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site.TYTR_CRIFA49-59
 		  2A:49-59
B:49-59

(-) Exons   (0, 0)

(no "Exon" information available for 1TYP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:487
 aligned with TYTR_CRIFA | P39040 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:487
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       
           TYTR_CRIFA     1 MSRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYQKGKRVEKI 487
               SCOP domains d1typa1 A:1-169,A:287-358 Trypanothione reductase                                                                                                                        d1typa2 A:170-286 Trypanothione reductase                                                                            d1typa1 A:1-169,A:287-358 Trypanothione reductase                       d1typa3 A:359-487 Trypanothione reductase                                                                                         SCOP domains
               CATH domains 1typA01 A:1-164,A:286-360  [code=3.50.50.60, no name defined]                                                                                                       1typA02 A:165-285  [code=3.50.50.60, no name defined]                                                                    1typA01 A:1-164,A:286-360  [code=3.50.50.60, no name defined]              1typA03 A:361-487  [code=3.30.390.30, no name defined]                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee..hhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.ee.hhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.eeeeee..eeeee........eeeeeeeeeeee...eee......hhhhh.hhhhhh.......eeeee..hhhhhhhhhhhhhhh....eeeeee.........hhhhhhhhhhhhhhh.eeeee...eeeeee.....eeeee....eeee.eeee...eee................................eee.hhhhh...hhhhhhhhhhhhhhhhhh............eee.....eeeee.hhhhhhhhh.eeeeeeeee.hhhhhhhh.....eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhhh.hhhhhhh.......hhhhh.......eeee..eee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-------- SAPs(SNPs)
                    PROSITE ------------------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1typ A   1 MSRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYQKGKRVEKI 487
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       


Chain B from PDB  Type:PROTEIN  Length:486
 aligned with TYTR_CRIFA | P39040 from UniProtKB/Swiss-Prot  Length:491

    Alignment length:486
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481      
           TYTR_CRIFA     2 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYQKGKRVEKI 487
               SCOP domains d1typb1 B:2-169,B:287-358 Trypanothione reductase                                                                                                                       d1typb2 B:170-286 Trypanothione reductase                                                                            d1typb1 B:2-169,B:287-358 Trypanothione reductase                       d1typb3 B:359-487 Trypanothione reductase                                                                                         SCOP domains
               CATH domains 1typB01 B:2-164,B:286-360  [code=3.50.50.60, no name defined]                                                                                                      1typB02 B:165-285  [code=3.50.50.60, no name defined]                                                                    1typB01 B:2-164,B:286-360  [code=3.50.50.60, no name defined]              1typB03 B:361-487  [code=3.30.390.30, no name defined]                                                                          CATH domains
           Pfam domains (1) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-1typB01 B:190-275                                                           --------------------------------------------------------------------------------------Pyr_redox_dim-1typB05 B:362-472                                                                                --------------- Pfam domains (1)
           Pfam domains (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Pyr_redox-1typB02 B:190-275                                                           --------------------------------------------------------------------------------------Pyr_redox_dim-1typB06 B:362-472                                                                                --------------- Pfam domains (2)
           Pfam domains (3) ----Pyr_redox_2-1typB03 B:6-333                                                                                                                                                                                                                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----Pyr_redox_2-1typB04 B:6-333                                                                                                                                                                                                                                                                                                             ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ...eeeeee..hhhhhhhhhhhhhhhh..eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...ee.hhhhheehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.eeeeee..eeeee........eeeeeeeeeeee...eee......hhhhh.hhhhhh.......eeeee..hhhhhhhhhhhhhhh....eeeeee.........hhhhhhhhhhhhhhh..eeee...eeeeee.....eeeee....eeee.eeee...eee.....hhhhhh.....................eee.hhhhh...hhhhhhhhhhhhhhhhhh...........eeee.....eeeee.hhhhhhhhh.eeeeeeeee..hhhhhhh.....eeeeeeee.....eeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.....eeee..ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------E-------- SAPs(SNPs)
                    PROSITE -----------------------------------------------PYRIDINE_RE-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1typ B   2 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWELDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGWGALQDNHTVLVRESADPNSAVLETLDTEYILLATGSWPQHLGIEGDDLCITSNEAFYLDEAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMILRGFDSELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIGRVPRSQTLQLDKAGVEVAKNGAIKVDAYSKTNVDNIYAIGDVTDRVMLTPVAINEGAAFVDTVFANKPRATDHTKVACAVFSIPPMGVCGYVEEDAAKKYDQVAVYESSFTPLMHNISGSTYKKFMVRIVTNHADGEVLGVHMLGDSSPEIIQSVAICLKMGAKISDFYNTIGVHPTSAEELCSMRTPAYFYQKGKRVEKI 487
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (3, 6)

Asymmetric/Biological Unit
(-)
Clan: NADP_Rossmann (1239)
(-)
Clan: no clan defined [family: Pyr_redox_dim] (44)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (TYTR_CRIFA | P39040)
molecular function
    GO:0015036    disulfide oxidoreductase activity    Catalysis of the reaction: substrate with reduced sulfide groups = substrate with oxidized disulfide bonds.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016668    oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a sulfur-containing group acts as a hydrogen or electron donor and reduces NAD or NADP.
    GO:0015042    trypanothione-disulfide reductase activity    Catalysis of the reaction: NADP+ + trypanothione = NADPH + H+ + trypanothione disulfide.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TYTR_CRIFA | P39040: 1fea 1feb 1fec 1tyt 2tpr

(-) Related Entries Specified in the PDB File

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