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1TYP
Asym. Unit
Info
Asym.Unit (173 KB)
Biol.Unit 1 (166 KB)
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(1)
Title
:
SUBSTRATE INTERACTIONS BETWEEN TRYPANOTHIONE REDUCTASE AND N1-GLUTATHIONYLSPERMIDINE DISULPHIDE AT 0.28-NM RESOLUTION
Authors
:
S. Bailey, W. N. Hunter
Date
:
29 Jun 92 (Deposition) - 31 Jan 94 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Keywords
:
Oxidoreductase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Bailey, K. Smith, A. H. Fairlamb, W. N. Hunter
Substrate Interactions Between Trypanothione Reductase And N1-Glutathionylspermidine Disulphide At 0. 28-Nm Resolution.
Eur. J. Biochem. V. 213 67 1993
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 12)
Info
All Hetero Components
1a: FLAVIN-ADENINE DINUCLEOTIDE (FADa)
1b: FLAVIN-ADENINE DINUCLEOTIDE (FADb)
2a: GLUTATHIONE (GSHa)
2b: GLUTATHIONE (GSHb)
2c: GLUTATHIONE (GSHc)
2d: GLUTATHIONE (GSHd)
3a: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPa)
3b: NADP NICOTINAMIDE-ADENINE-DINUCLEO... (NAPb)
4a: SPERMIDINE (SPDa)
4b: SPERMIDINE (SPDb)
4c: SPERMIDINE (SPDc)
4d: SPERMIDINE (SPDd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
FAD
2
Ligand/Ion
FLAVIN-ADENINE DINUCLEOTIDE
2
GSH
4
Ligand/Ion
GLUTATHIONE
3
NAP
2
Ligand/Ion
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
4
SPD
4
Ligand/Ion
SPERMIDINE
[
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ILE A:10 , GLY A:11 , GLY A:13 , SER A:14 , GLY A:15 , ASP A:35 , LEU A:36 , ALA A:46 , ALA A:47 , GLY A:50 , THR A:51 , CYS A:52 , GLY A:56 , CYS A:57 , LYS A:60 , GLY A:125 , TRP A:126 , GLY A:127 , ALA A:159 , THR A:160 , GLY A:161 , TYR A:198 , ARG A:287 , LEU A:294 , GLY A:326 , ASP A:327 , MET A:333 , LEU A:334 , THR A:335 , PRO A:336 , HOH A:501 , HOH A:503 , HOH A:516 , HOH A:540 , HOH A:621 , HIS B:461 , PRO B:462
BINDING SITE FOR RESIDUE FAD A 493
02
AC2
SOFTWARE
GLY A:195 , GLY A:196 , GLY A:197 , TYR A:198 , TYR A:221 , ARG A:222 , ARG A:228 , PHE A:230 , ILE A:285 , GLY A:286 , ARG A:287 , MET A:333 , CYS A:364 , VAL A:366 , HOH A:634 , HOH A:660 , HOH A:661 , HOH A:668
BINDING SITE FOR RESIDUE NAP A 494
03
AC3
SOFTWARE
SER A:14 , VAL A:58 , TYR A:110 , THR A:335 , ILE A:339 , SPD A:496 , GSH A:497 , HOH A:537 , HOH A:633 , HOH A:635 , HOH A:636 , HIS B:461 , GLU B:467 , SER B:470 , HOH B:633
BINDING SITE FOR RESIDUE GSH A 495
04
AC4
SOFTWARE
LEU A:17 , GLU A:18 , TRP A:21 , MET A:113 , GSH A:495
BINDING SITE FOR RESIDUE SPD A 496
05
AC5
SOFTWARE
LYS A:61 , ILE A:106 , TYR A:110 , GSH A:495 , SPD A:498 , HIS B:461 , PRO B:462 , THR B:463 , GLU B:466 , GLU B:467
BINDING SITE FOR RESIDUE GSH A 497
06
AC6
SOFTWARE
SER A:109 , GSH A:497
BINDING SITE FOR RESIDUE SPD A 498
07
AC7
SOFTWARE
HIS A:461 , GLY B:11 , GLY B:13 , SER B:14 , GLY B:15 , ASP B:35 , ALA B:46 , ALA B:47 , GLY B:50 , THR B:51 , CYS B:52 , VAL B:55 , GLY B:56 , CYS B:57 , LYS B:60 , GLY B:125 , TRP B:126 , GLY B:127 , ALA B:159 , THR B:160 , GLY B:161 , TYR B:198 , ARG B:287 , ARG B:290 , LEU B:294 , GLY B:326 , ASP B:327 , MET B:333 , LEU B:334 , THR B:335 , PRO B:336 , NAP B:494 , HOH B:501 , HOH B:502 , HOH B:505 , HOH B:508 , HOH B:535
BINDING SITE FOR RESIDUE FAD B 493
08
AC8
SOFTWARE
LEU B:167 , GLY B:195 , GLY B:196 , GLY B:197 , TYR B:198 , ILE B:199 , TYR B:221 , ARG B:222 , ARG B:228 , PHE B:230 , ILE B:285 , GLY B:286 , ARG B:287 , MET B:333 , LEU B:334 , CYS B:364 , ALA B:365 , FAD B:493 , HOH B:628 , HOH B:631 , HOH B:655 , HOH B:665 , HOH B:671 , HOH B:696
BINDING SITE FOR RESIDUE NAP B 494
09
AC9
SOFTWARE
HIS A:461 , SER A:470 , SER B:14 , GLU B:18 , TYR B:110 , THR B:335 , ILE B:339 , SPD B:496 , GSH B:497 , HOH B:667
BINDING SITE FOR RESIDUE GSH B 495
10
BC1
SOFTWARE
LEU B:17 , GLU B:18 , TRP B:21 , MET B:113 , GSH B:495
BINDING SITE FOR RESIDUE SPD B 496
11
BC2
SOFTWARE
PHE A:396 , HIS A:461 , PRO A:462 , THR A:463 , SER A:464 , ILE B:106 , TYR B:110 , GSH B:495 , SPD B:498 , HOH B:677
BINDING SITE FOR RESIDUE GSH B 497
12
BC3
SOFTWARE
SER B:109 , GLY B:112 , GSH B:497 , HOH B:692
BINDING SITE FOR RESIDUE SPD B 498
[
close Site info
]
SAPs(SNPs)/Variants
(1, 2)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_TYTR_CRIFA_001 (Q479E, chain A/B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_TYTR_CRIFA_001
*
Q
479
E
TYTR_CRIFA
---
---
A/B
Q
479
E
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: PYRIDINE_REDOX_1 (A:49-59,B:49-59)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PYRIDINE_REDOX_1
PS00076
Pyridine nucleotide-disulphide oxidoreductases class-I active site.
TYTR_CRIFA
49-59
2
A:49-59
B:49-59
[
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 6)
Info
All SCOP Domains
1a: SCOP_d1typa3 (A:359-487)
1b: SCOP_d1typb3 (B:359-487)
2a: SCOP_d1typa1 (A:1-169,A:287-358)
2b: SCOP_d1typa2 (A:170-286)
2c: SCOP_d1typb1 (B:2-169,B:287-358)
2d: SCOP_d1typb2 (B:170-286)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
CO dehydrogenase flavoprotein C-domain-like
(111)
Superfamily
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Family
:
FAD/NAD-linked reductases, dimerisation (C-terminal) domain
(76)
Protein domain
:
Trypanothione reductase
(10)
Crithidia fasciculata [TaxId: 5656]
(6)
1a
d1typa3
A:359-487
1b
d1typb3
B:359-487
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
FAD/NAD(P)-binding domain
(331)
Superfamily
:
FAD/NAD(P)-binding domain
(331)
Family
:
FAD/NAD-linked reductases, N-terminal and central domains
(92)
Protein domain
:
Trypanothione reductase
(10)
Crithidia fasciculata [TaxId: 5656]
(6)
2a
d1typa1
A:1-169,A:287-358
2b
d1typa2
A:170-286
2c
d1typb1
B:2-169,B:287-358
2d
d1typb2
B:170-286
[
close SCOP info
]
CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1typA03 (A:361-487)
1b: CATH_1typB03 (B:361-487)
2a: CATH_1typB01 (B:2-164,B:286-360)
2b: CATH_1typA02 (A:165-285)
2c: CATH_1typB02 (B:165-285)
2d: CATH_1typA01 (A:1-164,A:286-360)
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Enolase-like; domain 1
(252)
Homologous Superfamily
:
[code=3.30.390.30, no name defined]
(99)
Crithidia fasciculata. Organism_taxid: 5656
(3)
1a
1typA03
A:361-487
1b
1typB03
B:361-487
Architecture
:
3-Layer(bba) Sandwich
(528)
Topology
:
FAD/NAD(P)-binding domain
(373)
Homologous Superfamily
:
[code=3.50.50.60, no name defined]
(373)
Crithidia fasciculata. Organism_taxid: 5656
(3)
2a
1typB01
B:2-164,B:286-360
2b
1typA02
A:165-285
2c
1typB02
B:165-285
2d
1typA01
A:1-164,A:286-360
[
close CATH info
]
Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Pyr_redox_1typB01 (B:190-275)
1b: PFAM_Pyr_redox_1typB02 (B:190-275)
2a: PFAM_Pyr_redox_2_1typB03 (B:6-333)
2b: PFAM_Pyr_redox_2_1typB04 (B:6-333)
3a: PFAM_Pyr_redox_dim_1typB05 (B:362-472)
3b: PFAM_Pyr_redox_dim_1typB06 (B:362-472)
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Clans
(
)
(
)
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(
)
(
)
Organisms
(
)
(
)
Clan
:
NADP_Rossmann
(1239)
Family
:
Pyr_redox
(62)
Crithidia fasciculata
(3)
1a
Pyr_redox-1typB01
B:190-275
1b
Pyr_redox-1typB02
B:190-275
Family
:
Pyr_redox_2
(69)
Crithidia fasciculata
(3)
2a
Pyr_redox_2-1typB03
B:6-333
2b
Pyr_redox_2-1typB04
B:6-333
Clan
:
no clan defined [family: Pyr_redox_dim]
(44)
Family
:
Pyr_redox_dim
(44)
Crithidia fasciculata
(3)
3a
Pyr_redox_dim-1typB05
B:362-472
3b
Pyr_redox_dim-1typB06
B:362-472
[
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Asym.Unit (173 KB)
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