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(-) Description

Title :  THE STRUCTURE OF CLPP AT 2.3 ANGSTROM RESOLUTION SUGGESTS A MODEL FOR ATP-DEPENDENT PROTEOLYSIS
 
Authors :  J. Wang, J. A. Hartling, J. M. Flanagan
Date :  13 Oct 97  (Deposition) - 17 Jun 98  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Keywords :  Peptidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Wang, J. A. Hartling, J. M. Flanagan
The Structure Of Clpp At 2. 3 A Resolution Suggests A Model For Atp-Dependent Proteolysis.
Cell(Cambridge, Mass. ) V. 91 447 1997
PubMed-ID: 9390554  |  Reference-DOI: 10.1016/S0092-8674(00)80431-6
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CLP PEPTIDASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N
    EC Number: 3.4.21.92
    Engineered: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: CLPP

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TYF)

(-) Sites  (0, 0)

(no "Site" information available for 1TYF)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TYF)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TYF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TYF)

(-) PROSITE Motifs  (2, 28)

Asymmetric/Biological Unit (2, 28)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1CLP_PROTEASE_SERPS00381 Endopeptidase Clp serine active site.CLPP_ECOLI103-114
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:89-100
B:89-100
C:89-100
D:89-100
E:89-100
F:89-100
G:89-100
H:89-100
I:89-100
J:89-100
K:89-100
L:89-100
M:89-100
N:89-100
2CLP_PROTEASE_HISPS00382 Endopeptidase Clp histidine active site.CLPP_ECOLI125-138
 
 
 
 
 
 
 
 
 
 
 
 
 		  14A:111-124
B:111-124
C:111-124
D:111-124
E:111-124
F:111-124
G:111-124
H:111-124
I:111-124
J:111-124
K:111-124
L:111-124
M:111-124
N:111-124

(-) Exons   (0, 0)

(no "Exon" information available for 1TYF)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfa_ A: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfA00 A:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhh..eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eee.hhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf A  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain B from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfb_ B: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfB00 B:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhh.....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf B  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain C from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfc_ C: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfC00 C:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhhh.....eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eee.hhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf C  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain D from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfd_ D: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfD00 D:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eee.hhhhhhhh.....eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf D  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain E from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfe_ E: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfE00 E:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhh...eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf E  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain F from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyff_ F: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfF00 F:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eee.hhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf F  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain G from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfg_ G: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfG00 G:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh....eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf G  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain H from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfh_ H: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfH00 H:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eee.hhhhhh.......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf H  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain I from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfi_ I: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfI00 I:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eee.hhhhhh.....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf I  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain J from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfj_ J: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfJ00 J:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh....eee.hhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf J  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain K from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfk_ K: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfK00 K:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eee.hhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf K  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain L from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfl_ L: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfL00 L:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf L  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain M from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfm_ M: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfM00 M:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf M  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190   


Chain N from PDB  Type:PROTEIN  Length:183
 aligned with CLPP_ECOLI | P0A6G7 from UniProtKB/Swiss-Prot  Length:207

    Alignment length:183
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204   
           CLPP_ECOLI    25 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 207
               SCOP domains d1tyfn_ N: Clp protease, ClpP subunit                                                                                                                                                   SCOP domains
               CATH domains 1tyfN00 N:11-193 2-enoyl-CoA Hydratase; Chain A, domain 1                                                                                                                               CATH domains
           Pfam domains (1) CLP_protease-1tyfN01 N:11-192                                                                                                                                                         - Pfam domains (1)
           Pfam domains (2) CLP_protease-1tyfN02 N:11-192                                                                                                                                                         - Pfam domains (2)
           Pfam domains (3) CLP_protease-1tyfN03 N:11-192                                                                                                                                                         - Pfam domains (3)
           Pfam domains (4) CLP_protease-1tyfN04 N:11-192                                                                                                                                                         - Pfam domains (4)
           Pfam domains (5) CLP_protease-1tyfN05 N:11-192                                                                                                                                                         - Pfam domains (5)
           Pfam domains (6) CLP_protease-1tyfN06 N:11-192                                                                                                                                                         - Pfam domains (6)
           Pfam domains (7) CLP_protease-1tyfN07 N:11-192                                                                                                                                                         - Pfam domains (7)
           Pfam domains (8) CLP_protease-1tyfN08 N:11-192                                                                                                                                                         - Pfam domains (8)
           Pfam domains (9) CLP_protease-1tyfN09 N:11-192                                                                                                                                                         - Pfam domains (9)
          Pfam domains (10) CLP_protease-1tyfN10 N:11-192                                                                                                                                                         - Pfam domains (10)
          Pfam domains (11) CLP_protease-1tyfN11 N:11-192                                                                                                                                                         - Pfam domains (11)
          Pfam domains (12) CLP_protease-1tyfN12 N:11-192                                                                                                                                                         - Pfam domains (12)
          Pfam domains (13) CLP_protease-1tyfN13 N:11-192                                                                                                                                                         - Pfam domains (13)
          Pfam domains (14) CLP_protease-1tyfN14 N:11-192                                                                                                                                                         - Pfam domains (14)
         Sec.struct. author ........hhhhhhhh.eeeee....hhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhh....eeeee..eeehhhhhhhh......eeee...eeee..........hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh...eeeehhhhhhh....eee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------CLP_PROTEASE----------CLP_PROTEASE_H--------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tyf N  11 SRGERSFDIYSRLLKERVIFLTGQVEDHMANLIVAQMLFLEAENPEKDIYLYINSPGGVITAGMSIYDTMQFIKPDVSTICMGQAASMGAFLLTAGAKGKRFCLPNSRVMIHQPLGGYQGQATDIEIHAREILKVKGRMNELMALHTGQSLEQIERDTERDRFLSAPEAVEYGLVDSILTHRN 193
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Complex (3881)
(-)
Topology: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)
(-)
Homologous Superfamily: 2-enoyl-CoA Hydratase; Chain A, domain 1 (89)
(-)
Escherichia coli. Organism_taxid: 562 (3)
1a1tyfA00A:11-193
1b1tyfB00B:11-193
1c1tyfK00K:11-193
1d1tyfL00L:11-193
1e1tyfM00M:11-193
1f1tyfN00N:11-193
1g1tyfC00C:11-193
1h1tyfD00D:11-193
1i1tyfE00E:11-193
1j1tyfF00F:11-193
1k1tyfG00G:11-193
1l1tyfH00H:11-193
1m1tyfI00I:11-193
1n1tyfJ00J:11-193

(-) Pfam Domains  (1, 14)

Asymmetric/Biological Unit
(-)
Clan: ClpP_crotonase (88)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L,M,N   (CLPP_ECOLI | P0A6G7)
molecular function
    GO:0004176    ATP-dependent peptidase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the hydrolysis of peptide bonds.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0008233    peptidase activity    Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0004252    serine-type endopeptidase activity    Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
    GO:0008236    serine-type peptidase activity    Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
biological process
    GO:0006515    misfolded or incompletely synthesized protein catabolic process    The chemical reactions and pathways resulting in the breakdown of misfolded or attenuated proteins.
    GO:0010498    proteasomal protein catabolic process    The chemical reactions and pathways resulting in the breakdown of a protein or peptide by hydrolysis of its peptide bonds that is mediated by the proteasome.
    GO:0006508    proteolysis    The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
    GO:0009266    response to temperature stimulus    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a temperature stimulus.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CLPP_ECOLI | P0A6G7: 1yg6 1yg8 2fzs 3hln 3mt6

(-) Related Entries Specified in the PDB File

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