1TS5 - JenaLib

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Title :   I140T MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS

Authors :   C. A. Earhart, D. T. Mitchell, D. L. Murray, D. M. Pinheiro, M. Matsumura, P. M. Schlievert, D. H. Ohlendorf

Date :   10 Oct 97 (Deposition) - 16 Dec 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Toxin, Superantigen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Earhart, D. T. Mitchell, D. L. Murray, D. M. Pinheiro, M. Matsumura, P. M. Schlievert, D. H. Ohlendorf
Structures Of Five Mutants Of Toxic Shock Syndrome Toxin-1 With Reduced Biological Activity.
Biochemistry V. 37 7194 1998
PubMed-ID: 9585531 | Reference-DOI: 10.1021/BI9721896
(for further references see the PDB file header)

Molecule 1 - TOXIC SHOCK SYNDROME TOXIN-1
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	STAPHYLOCOCCUS AUREUS
	Expression System Taxid	:	1280
	Mutation	:	YES
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Synonym	:	TSST-1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1TS5)

(no "Site" information available for 1TS5)

(no "SS Bond" information available for 1TS5)

(no "Cis Peptide Bond" information available for 1TS5)

(no "SAP(SNP)/Variant" information available for 1TS5)

Asymmetric Unit (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	2	A:121-144 B:321-344

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	1	A:121-144 -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	1	- B:321-344

(no "Exon" information available for 1TS5)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:194
 aligned with TSST_STAAU | P06886 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:194
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    
           TSST_STAAU    41 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYGPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 234
               SCOP domains d1ts5a1 A:1-93 Toxic shock syndrome toxin-1 (TSST-1)                                         d1ts5a2 A:94-194 Toxic shock syndrome toxin-1 (TSST-1)                                                SCOP domains
               CATH domains 1ts5A01          1ts5A02 A:18-88  [code=2.40.50.110, no name defined]                   1ts5A01 A:1-17,A:89-194  [code=3.10.20.120, no name defined]                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee...eeeeee..eeeee.....eeeee.................eeeeeee..........eeeee................eeeee..eee..............hhhhhhhhhhhhhhh...........eeeeeee....eeeee......hhh......hhheeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ts5 A   1 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQTHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:194
 aligned with TSST_STAAU | P06886 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:194
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    
           TSST_STAAU    41 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYGPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 234
               SCOP domains d1ts5b1 B:201-293 Toxic shock syndrome toxin-1 (TSST-1)                                      d1ts5b2 B:294-394 Toxic shock syndrome toxin-1 (TSST-1)                                               SCOP domains
               CATH domains 1ts5B01          1ts5B02 B:218-288  [code=2.40.50.110, no name defined]                 1ts5B01 B:201-217,B:289-394  [code=3.10.20.120, no name defined]                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee...eeeeee..eeeee.....eeeee.................eeeeeee..........eeeee................eeeee..eee..............hhhhhhhhhhhhhhh..........eeeeeeee....eeeee......hhh......hhheeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ts5 B 201 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRHQLTQTHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 394
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: [code=3.10.20.120, no name defined] (91)

Staphylococcus aureus. Organism_taxid: 1280. (14)

1a	1ts5A01	A:1-17,A:89-194
1b	1ts5B01	B:201-217,B:289-394

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P) (1040)

Homologous Superfamily: [code=2.40.50.110, no name defined] (136)

Staphylococcus aureus. Organism_taxid: 1280. (14)

2a	1ts5A02	A:18-88
2b	1ts5B02	B:218-288

(no "Pfam Domain" information available for 1TS5)

Asymmetric Unit(hide GO term definitions)

Chain A,B (TSST_STAAU | P06886)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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