1TS3 - JenaLib

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Title :   H135A MUTANT OF TOXIC SHOCK SYNDROME TOXIN-1 FROM S. AUREUS

Authors :   C. A. Earhart, D. T. Mitchell, D. L. Murray, D. M. Pinheiro, M. Matsumura, P. M. Schlievert, D. H. Ohlendorf

Date :   10 Oct 97 (Deposition) - 16 Dec 98 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Toxin, Superantigen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Earhart, D. T. Mitchell, D. L. Murray, D. M. Pinheiro, M. Matsumura, P. M. Schlievert, D. H. Ohlendorf
Structures Of Five Mutants Of Toxic Shock Syndrome Toxin-1 With Reduced Biological Activity.
Biochemistry V. 37 7194 1998
PubMed-ID: 9585531 | Reference-DOI: 10.1021/BI9721896
(for further references see the PDB file header)

Molecule 1 - TOXIC SHOCK SYNDROME TOXIN-1
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	STAPHYLOCOCCUS AUREUS
	Expression System Taxid	:	1280
	Mutation	:	YES
	Organism Scientific	:	STAPHYLOCOCCUS AUREUS
	Organism Taxid	:	1280
	Synonym	:	TSST-1

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1TS3)

(no "Site" information available for 1TS3)

(no "SS Bond" information available for 1TS3)

(no "Cis Peptide Bond" information available for 1TS3)

(no "SAP(SNP)/Variant" information available for 1TS3)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	3	A:121-144 B:321-344 C:521-544

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	1	A:121-144 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	1	- B:321-344 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	STAPH_STREP_TOXIN_2	PS00278	Staphyloccocal enterotoxin/Streptococcal pyrogenic exotoxin signature 2.	TSST_STAAU	161-184	1	- - C:521-544

(no "Exon" information available for 1TS3)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:194
 aligned with TSST_STAAU | P06886 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:194
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    
           TSST_STAAU    41 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYGPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 234
               SCOP domains d1ts3a1 A:1-93 Toxic shock syndrome toxin-1 (TSST-1)                                         d1ts3a2 A:94-194 Toxic shock syndrome toxin-1 (TSST-1)                                                SCOP domains
               CATH domains 1ts3A01          1ts3A02 A:18-88  [code=2.40.50.110, no name defined]                   1ts3A01 A:1-17,A:89-194  [code=3.10.20.120, no name defined]                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee...eeeeee..eeeee.....eeeee.................eeeeeee..........eeeee................eeeee...................hhhhhhhhhhhhhhh..........eeeeeeee....eeeee......hhh......hhheeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ts3 A   1 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRAQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 194
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190

Chain B from PDB  Type:PROTEIN  Length:194
 aligned with TSST_STAAU | P06886 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:194
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    
           TSST_STAAU    41 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYGPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 234
               SCOP domains d1ts3b1 B:201-293 Toxic shock syndrome toxin-1 (TSST-1)                                      d1ts3b2 B:294-394 Toxic shock syndrome toxin-1 (TSST-1)                                               SCOP domains
               CATH domains 1ts3B01          1ts3B02 B:218-288  [code=2.40.50.110, no name defined]                 1ts3B01 B:201-217,B:289-394  [code=3.10.20.120, no name defined]                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhh...eee...eeeeee..eeeee.....eeeee.................eeeeeee..........eeeee................eeeee...................hhhhhhhhhhhhhhh..........eeeeeeee....eeeee......hhh......hhheeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ts3 B 201 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRAQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 394
                                   210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain C from PDB  Type:PROTEIN  Length:194
 aligned with TSST_STAAU | P06886 from UniProtKB/Swiss-Prot  Length:234

    Alignment length:194
                                    50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230    
           TSST_STAAU    41 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYGPKFDKKQLAISTLDFEIRHQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 234
               SCOP domains d1ts3c1 C:401-493 Toxic shock syndrome toxin-1 (TSST-1)                                      d1ts3c2 C:494-594 Toxic shock syndrome toxin-1 (TSST-1)                                               SCOP domains
               CATH domains 1ts3C01          1ts3C02 C:418-488  [code=2.40.50.110, no name defined]                 1ts3C01 C:401-417,C:489-594  [code=3.10.20.120, no name defined]                                           CATH domains
           Pfam domains (1) ----Stap_Strp_toxin-1ts3C04 C:405-491                                                      -------Stap_Strp_tox_C-1ts3C01 C:499-594                                                                Pfam domains (1)
           Pfam domains (2) ----Stap_Strp_toxin-1ts3C05 C:405-491                                                      -------Stap_Strp_tox_C-1ts3C02 C:499-594                                                                Pfam domains (2)
           Pfam domains (3) ----Stap_Strp_toxin-1ts3C06 C:405-491                                                      -------Stap_Strp_tox_C-1ts3C03 C:499-594                                                                Pfam domains (3)
         Sec.struct. author ...hhhhhhhhhhh...eee...eeeeee..eeeee.....eeeee.................eeeeeee..........eeeee................eeeee...................hhhhhhhhhhhhhhh..........eeeeeeee....eeeee......hhh......hhheeeeeeeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------STAPH_STREP_TOXIN_2     -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ts3 C 401 STNDNIKDLLDWYSSGSDTFTNSEVLDNSLGSMRIKNTDGSISLIIFPSPYYSPAFTKGEKVDLNTKRTKKSQHTSEGTYIHFQISGVTNTEKLPTPIELPLKVKVHGKDSPLKYWPKFDKKQLAISTLDFEIRAQLTQIHGLYRSSDKTGGYWKITMNDGSTYQSDLSKKFEYNTEKPPINIDEIKTIEAEIN 594
                                   410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Ubiquitin-like (UB roll) (674)

Homologous Superfamily: [code=3.10.20.120, no name defined] (91)

Staphylococcus aureus. Organism_taxid: 1280. (14)

1a	1ts3A01	A:1-17,A:89-194
1b	1ts3B01	B:201-217,B:289-394
1c	1ts3C01	C:401-417,C:489-594

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: OB fold (Dihydrolipoamide Acetyltransferase, E2P) (1040)

Homologous Superfamily: [code=2.40.50.110, no name defined] (136)

Staphylococcus aureus. Organism_taxid: 1280. (14)

2a	1ts3A02	A:18-88
2b	1ts3B02	B:218-288
2c	1ts3C02	C:418-488

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ant-toxin_C (48)

Family: Stap_Strp_tox_C (48)

Staphylococcus aureus (41)

1a	Stap_Strp_tox_C-1ts3C01	C:499-594
1b	Stap_Strp_tox_C-1ts3C02	C:499-594
1c	Stap_Strp_tox_C-1ts3C03	C:499-594

Clan: no clan defined [family: Stap_Strp_toxin] (39)

Family: Stap_Strp_toxin (39)

Staphylococcus aureus (33)

2a	Stap_Strp_toxin-1ts3C04	C:405-491
2b	Stap_Strp_toxin-1ts3C05	C:405-491
2c	Stap_Strp_toxin-1ts3C06	C:405-491

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (TSST_STAAU | P06886)

biological process
	GO:0009405	pathogenesis	The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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