1TJL - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Biological Unit 11 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR DKSA FROM E. COLI

Authors :   A. Perederina, V. Svetlov, M. N. Vassylyeva, I. Artsimovitch, S. Yokoy D. G. Vassylyev, Riken Structural Genomics/Proteomics Initiati

Date :   06 Jun 04 (Deposition) - 07 Sep 04 (Release) - 16 Apr 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: I  (1x)
Biol. Unit 10: J  (1x)
Biol. Unit 11: A,C  (1x)

Keywords :   Dksa, Transcription Factor, Rna Polymerase, Stringent Response, Ppgpp, Riken Structural Genomics/Proteomics Initiative, Rsgi, Structural Genomics, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Perederina, V. Svetlov, M. N. Vassylyeva, T. H. Tahirov, S. Yokoyama, I. Artsimovitch, D. G. Vassylyev
Regulation Through The Secondary Channel--Structural Framework For Ppgpp-Dksa Synergism During Transcription
Cell(Cambridge, Mass. ) V. 118 297 2004
PubMed-ID: 15294156 | Reference-DOI: 10.1016/J.CELL.2004.06.030

Molecule 1 - DNAK SUPPRESSOR PROTEIN
	Chains	:	A, B, C, D, E, F, G, H, I, J
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PVS11
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DKSA
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	DKSA, TRANSCRIPTION FACTOR

		1	2	3	4	5	6	7	8	9	10
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:									I
Biological Unit 10 (1x)	:										J
Biological Unit 11 (1x)	:	A		C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 10)

No.	Name	Count	Type	Full Name
1	ZN	10	Ligand/Ion	ZINC ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 9 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 10 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 11 (0, 0)

No.	Name	Count	Type	Full Name
1	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:114 , CYS A:117 , CYS A:135 , CYS A:138	BINDING SITE FOR RESIDUE ZN A 200
02	AC2	SOFTWARE	CYS B:114 , SER B:116 , CYS B:117 , CYS B:135 , CYS B:138	BINDING SITE FOR RESIDUE ZN B 200
03	AC3	SOFTWARE	CYS C:114 , CYS C:117 , CYS C:135 , CYS C:138	BINDING SITE FOR RESIDUE ZN C 200
04	AC4	SOFTWARE	CYS D:114 , CYS D:117 , CYS D:135 , CYS D:138	BINDING SITE FOR RESIDUE ZN D 200
05	AC5	SOFTWARE	CYS E:114 , CYS E:117 , CYS E:135 , CYS E:138	BINDING SITE FOR RESIDUE ZN E 200
06	AC6	SOFTWARE	CYS F:114 , CYS F:117 , CYS F:135 , CYS F:138	BINDING SITE FOR RESIDUE ZN F 200
07	AC7	SOFTWARE	CYS G:114 , CYS G:117 , CYS G:135 , CYS G:138	BINDING SITE FOR RESIDUE ZN G 200
08	AC8	SOFTWARE	CYS H:114 , CYS H:117 , CYS H:135 , CYS H:138	BINDING SITE FOR RESIDUE ZN H 200
09	AC9	SOFTWARE	CYS I:114 , CYS I:117 , CYS I:135 , CYS I:138	BINDING SITE FOR RESIDUE ZN I 200
10	BC1	SOFTWARE	CYS J:114 , CYS J:117 , CYS J:135 , CYS J:138	BINDING SITE FOR RESIDUE ZN J 200

(no "SS Bond" information available for 1TJL)

(no "Cis Peptide Bond" information available for 1TJL)

(no "SAP(SNP)/Variant" information available for 1TJL)

Asymmetric Unit (2, 20)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	10	A:71-151 B:71-151 C:71-151 D:71-151 E:71-151 F:71-151 G:71-151 H:71-151 I:71-151 J:71-151
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	10	A:114-138 B:114-138 C:114-138 D:114-138 E:114-138 F:114-138 G:114-138 H:114-138 I:114-138 J:114-138

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	A:71-151 - - - - - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	A:114-138 - - - - - - - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- B:71-151 - - - - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- B:114-138 - - - - - - - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - C:71-151 - - - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - C:114-138 - - - - - - -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - D:71-151 - - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - D:114-138 - - - - - -

Biological Unit 5 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - E:71-151 - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - E:114-138 - - - - -

Biological Unit 6 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - - F:71-151 - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - - F:114-138 - - - -

Biological Unit 7 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - - - G:71-151 - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - - - G:114-138 - - -

Biological Unit 8 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - - - - H:71-151 - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - - - - H:114-138 - -

Biological Unit 9 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - - - - - I:71-151 -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - - - - - I:114-138 -

Biological Unit 10 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	1	- - - - - - - - - J:71-151
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	1	- - - - - - - - - J:114-138

Biological Unit 11 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ZF_DKSA_2	PS51128	Prokaryotic dksA C4-type zinc finger profiles.	DKSA_ECOLI	71-151	2	A:71-151 - C:71-151 - - - - - - -
2	ZF_DKSA_1	PS01102	Prokaryotic dksA C4-type zinc finger.	DKSA_ECOLI	114-138	2	A:114-138 - C:114-138 - - - - - - -

(no "Exon" information available for 1TJL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjla1 A:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjla2 A:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: A:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: A:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl A   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain B from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlb1 B:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlb2 B:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: B:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: B:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl B   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain C from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlc1 C:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlc2 C:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: C:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: C:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl C   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain D from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjld1 D:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjld2 D:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: D:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: D:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl D   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain E from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjle1 E:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjle2 E:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: E:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: E:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl E   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain F from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlf1 F:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlf2 F:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: F:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: F:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl F   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain G from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlg1 G:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlg2 G:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: G:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: G:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl G   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain H from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlh1 H:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlh2 H:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: H:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: H:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl H   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain I from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjli1 I:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjli2 I:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: I:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: I:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl I   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Chain J from PDB  Type:PROTEIN  Length:145
 aligned with DKSA_ECOLI | P0ABS1 from UniProtKB/Swiss-Prot  Length:151

    Alignment length:145
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146     
           DKSA_ECOLI     7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
               SCOP domains d1tjlj1 J:7-110 DnaK suppressor protein DksA, alpha-hairpin domain                                      d1tjlj2 J:111-151                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ01 J:109-147         ---- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ02 J:109-147         ---- Pfam domains (2)
           Pfam domains (3) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ03 J:109-147         ---- Pfam domains (3)
           Pfam domains (4) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ04 J:109-147         ---- Pfam domains (4)
           Pfam domains (5) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ05 J:109-147         ---- Pfam domains (5)
           Pfam domains (6) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ06 J:109-147         ---- Pfam domains (6)
           Pfam domains (7) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ07 J:109-147         ---- Pfam domains (7)
           Pfam domains (8) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ08 J:109-147         ---- Pfam domains (8)
           Pfam domains (9) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ09 J:109-147         ---- Pfam domains (9)
          Pfam domains (10) ------------------------------------------------------------------------------------------------------zf-dskA_traR-1tjlJ10 J:109-147         ---- Pfam domains (10)
         Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----------------------------------------------------------------ZF_DKSA_2  PDB: J:71-151 UniProt: 71-151                                          PROSITE (1)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------ZF_DKSA_1  PDB: J:114-138------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tjl J   7 RKTSSLSILAIAGVEPYQEKPGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLELRNRDRERKLIKKIEKTLKKVEDEDFGYCESCGVEIGIRRLEARPTADLCIDCKTLAEIREKQMAG 151
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Long alpha-hairpin (315)

Superfamily: DnaK suppressor protein DksA, alpha-hairpin domain (1)

Family: DnaK suppressor protein DksA, alpha-hairpin domain (1)

Protein domain: DnaK suppressor protein DksA, alpha-hairpin domain (1)

Escherichia coli [TaxId: 562] (1)

1a	d1tjla1	A:7-110
1b	d1tjlb1	B:7-110
1c	d1tjlc1	C:7-110
1d	d1tjld1	D:7-110
1e	d1tjle1	E:7-110
1f	d1tjlf1	F:7-110
1g	d1tjlg1	G:7-110
1h	d1tjlh1	H:7-110
1i	d1tjli1	I:7-110
1j	d1tjlj1	J:7-110

Class: Small proteins (3458)

Fold: Glucocorticoid receptor-like (DNA-binding domain) (292)

Superfamily: Glucocorticoid receptor-like (DNA-binding domain) (292)

Family: Prokaryotic DksA/TraR C4-type zinc finger (1)

Protein domain: DnaK suppressor protein DksA, zinc finger domain (1)

Escherichia coli [TaxId: 562] (1)

2a	d1tjla2	A:111-151
2b	d1tjlb2	B:111-151
2c	d1tjlc2	C:111-151
2d	d1tjld2	D:111-151
2e	d1tjle2	E:111-151
2f	d1tjlf2	F:111-151
2g	d1tjlg2	G:111-151
2h	d1tjlh2	H:111-151
2i	d1tjli2	I:111-151
2j	d1tjlj2	J:111-151

(no "CATH Domain" information available for 1TJL)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Zn_Beta_Ribbon (109)

Family: zf-dskA_traR (2)

Escherichia coli (strain K12) (2)

1a	zf-dskA_traR-1tjlJ01	J:109-147
1b	zf-dskA_traR-1tjlJ02	J:109-147
1c	zf-dskA_traR-1tjlJ03	J:109-147
1d	zf-dskA_traR-1tjlJ04	J:109-147
1e	zf-dskA_traR-1tjlJ05	J:109-147
1f	zf-dskA_traR-1tjlJ06	J:109-147
1g	zf-dskA_traR-1tjlJ07	J:109-147
1h	zf-dskA_traR-1tjlJ08	J:109-147
1i	zf-dskA_traR-1tjlJ09	J:109-147
1j	zf-dskA_traR-1tjlJ10	J:109-147

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J (DKSA_ECOLI | P0ABS1)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0010468	regulation of gene expression	Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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	1tjl
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	DKSA_ECOLI \| P0ABS1	:	5vsw 5w1t

(no "Related Entries Specified in the PDB File" available for 1TJL)

Description

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Ligands, Modified Residues, Ions (1, 10)

Sites (10, 10)

SS Bonds (0, 0)

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