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Sequence, Chains, Asymmetric and Biological Units

Title CRYSTAL STRUCTURE OF TRANSCRIPTION FACTOR DKSA FROM E. COLI
Keywords DKSA, TRANSCRIPTION FACTOR, RNA POLYMERASE, STRINGENT RESPON PPGPP, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSG STRUCTURAL GENOMICS, TRANSCRIPTION
Experiment X-ray diffraction
Number of Models  1

   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  
PDB   1TJL     released     available     available     Quaternary Structure Server  
Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   DNAK SUPPRESSOR PROTEIN  A 145 1179 0
2  Protein   DNAK SUPPRESSOR PROTEIN  B 145 1179 0
3  Protein   DNAK SUPPRESSOR PROTEIN  C 145 1179 0
4  Protein   DNAK SUPPRESSOR PROTEIN  D 145 1179 0
5  Protein   DNAK SUPPRESSOR PROTEIN  E 145 1179 0
6  Protein   DNAK SUPPRESSOR PROTEIN  F 145 1179 0
7  Protein   DNAK SUPPRESSOR PROTEIN  G 145 1179 0
8  Protein   DNAK SUPPRESSOR PROTEIN  H 145 1179 0
9  Protein   DNAK SUPPRESSOR PROTEIN  I 145 1179 0
10  Protein   DNAK SUPPRESSOR PROTEIN  J 145 1179 0
11  Ligand   DNAK SUPPRESSOR PROTEIN  A 1 0 1
12  Ligand   DNAK SUPPRESSOR PROTEIN  B 1 0 1
13  Ligand   DNAK SUPPRESSOR PROTEIN  C 1 0 1
14  Ligand   DNAK SUPPRESSOR PROTEIN  D 1 0 1
15  Ligand   DNAK SUPPRESSOR PROTEIN  E 1 0 1
16  Ligand   DNAK SUPPRESSOR PROTEIN  F 1 0 1
17  Ligand   DNAK SUPPRESSOR PROTEIN  G 1 0 1
18  Ligand   DNAK SUPPRESSOR PROTEIN  H 1 0 1
19  Ligand   DNAK SUPPRESSOR PROTEIN  I 1 0 1
20  Ligand   DNAK SUPPRESSOR PROTEIN  J 1 0 1
21 Water     1022 0 1022
total       2482 11790 1032
Proteins
Unit 1 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 2 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 3 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 4 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 5 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 6 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 7 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 8 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 9 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Unit 10 ARG7 LYS8 THR9 SER10 SER11 LEU12 SER13 ILE14 LEU15 ALA16 ILE17 ALA18 GLY19 VAL20 GLU21 PRO22 TYR23 GLN24 GLU25 LYS26 PRO27 GLY28 GLU29 GLU30 TYR31 MET32 ASN33 GLU34 ALA35 GLN36 LEU37 ALA38 HIS39 PHE40 ARG41 ARG42 ILE43 LEU44 GLU45 ALA46 TRP47 ARG48 ASN49 GLN50 LEU51 ARG52 ASP53 GLU54 VAL55 ASP56 ARG57 THR58 VAL59 THR60 HIS61 MET62 GLN63 ASP64 GLU65 ALA66 ALA67 ASN68 PHE69 PRO70 ASP71 PRO72 VAL73 ASP74 ARG75 ALA76 ALA77 GLN78 GLU79 GLU80 GLU81 PHE82 SER83 LEU84 GLU85 LEU86 ARG87 ASN88 ARG89 ASP90 ARG91 GLU92 ARG93 LYS94 LEU95 ILE96 LYS97 LYS98 ILE99 GLU100 LYS101 THR102 LEU103 LYS104 LYS105 VAL106 GLU107 ASP108 GLU109 ASP110 PHE111 GLY112 TYR113 CYS114 GLU115 SER116 CYS117 GLY118 VAL119 GLU120 ILE121 GLY122 ILE123 ARG124 ARG125 LEU126 GLU127 ALA128 ARG129 PRO130 THR131 ALA132 ASP133 LEU134 CYS135 ILE136 ASP137 CYS138 LYS139 THR140 LEU141 ALA142 GLU143 ILE144 ARG145 GLU146 LYS147 GLN148 MET149 ALA150 GLY151
Ligands
Unit 11 ZN200
Unit 12 ZN200
Unit 13 ZN200
Unit 14 ZN200
Unit 15 ZN200
Unit 16 ZN200
Unit 17 ZN200
Unit 18 ZN200
Unit 19 ZN200
Unit 20 ZN200
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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany