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(-) Description

Title :  CRYSTAL STRUCTURE OF VSHP_BPP21 IN SPACE GROUP H3 WITH HIGH RESOLUTION.
 
Authors :  C. Chang, P. Forrer, D. Ott, A. Wlodawer, A. Plueckthun
Date :  21 May 04  (Deposition) - 02 Nov 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Shp, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Forrer, C. Chang, D. Ott, A. Wlodawer, A. Plueckthun
Kinetic Stability And Crystal Structure Of The Viral Capsid Protein Shp.
J. Mol. Biol. V. 344 179 2004
PubMed-ID: 15504410  |  Reference-DOI: 10.1016/J.JMB.2004.09.030
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEAD DECORATION PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ENTEROBACTERIA PHAGE P21
    Organism Taxid: 10711
    Synonym: HEAD PROTEIN GPSHP

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1DSN1Mod. Amino AcidD-SERINE
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1DSN3Mod. Amino AcidD-SERINE

(-) Sites  (0, 0)

(no "Site" information available for 1TD4)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TD4)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:113 -Pro A:114

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1TD4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:103
                                    22        32        42        52        62        72        82        92       102       112   
           DECO_BPP21    13 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 115
               SCOP domains d1td4a_ A: Head decoration protein D (gpD, major capsid protein D)                                      SCOP domains
               CATH domains 1td4A00 A:12-114  [code=2.40.300.10, no name defined]                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........eeee......eee..........eee.........eeeee.eeeee.hhh......hhhhhhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1td4 A  12 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPExVDEHKKANAFAGSALSHAALP 114
                                    21        31        41        51        61        71        81        91 |     101       111   
                                                                                                            93-DSN
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TD4)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (DECO_BPP21 | P36275)
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DECO_BPP21 | P36275: 1td0 1td3

(-) Related Entries Specified in the PDB File

1td3 SAME PROTEIN, C 2 SPACE GROUP