1TD3 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF VSHP_BPP21 IN SPACE GROUP C2

Authors :   C. Chang, P. Forrer, D. Ott, A. Wlodawer, A. Plueckthun

Date :   21 May 04 (Deposition) - 02 Nov 04 (Release) - 22 Feb 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.37

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Shp, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   P. Forrer, C. Chang, D. Ott, A. Wlodawer, A. Plueckthun
Kinetic Stability And Crystal Structure Of The Viral Capsid Protein Shp.
J. Mol. Biol. V. 344 179 2004
PubMed-ID: 15504410 | Reference-DOI: 10.1016/J.JMB.2004.09.030

Molecule 1 - HEAD DECORATION PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	SHP
	Organism Scientific	:	ENTEROBACTERIA PHAGE P21
	Organism Taxid	:	10711
	Synonym	:	HEAD PROTEIN GPSHP

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1TD3)

(no "Site" information available for 1TD3)

(no "SS Bond" information available for 1TD3)

Asymmetric/Biological Unit

No.	Residues
1	Leu A:113	-	Pro A:114
2	Leu B:313	-	Pro B:314
3	Leu C:513	-	Pro C:514

(no "SAP(SNP)/Variant" information available for 1TD3)

(no "PROSITE Motif" information available for 1TD3)

(no "Exon" information available for 1TD3)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:103
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:103
                                    22        32        42        52        62        72        82        92       102       112   
           DECO_BPP21    13 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 115
               SCOP domains d1td3a_ A: Head decoration protein D (gpD, major capsid protein D)                                      SCOP domains
               CATH domains 1td3A00 A:12-114  [code=2.40.300.10, no name defined]                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........eeee......eee..........eee.........eeeee.eeeee.hhh......hhhhhhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1td3 A  12 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 114
                                    21        31        41        51        61        71        81        91       101       111

Chain B from PDB  Type:PROTEIN  Length:103
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:103
                                    22        32        42        52        62        72        82        92       102       112   
           DECO_BPP21    13 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 115
               SCOP domains d1td3b_ B: Head decoration protein D (gpD, major capsid protein D)                                      SCOP domains
               CATH domains 1td3B00 B:212-314  [code=2.40.300.10, no name defined]                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........eeee......eee..........eee.........eeeee.eeeee.hhh......hhhhhhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1td3 B 212 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 314
                                   221       231       241       251       261       271       281       291       301       311

Chain C from PDB  Type:PROTEIN  Length:103
 aligned with DECO_BPP21 | P36275 from UniProtKB/Swiss-Prot  Length:115

    Alignment length:103
                                    22        32        42        52        62        72        82        92       102       112   
           DECO_BPP21    13 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 115
               SCOP domains d1td3c_ C: Head decoration protein D (gpD, major capsid protein D)                                      SCOP domains
               CATH domains 1td3C00 C:412-514  [code=2.40.300.10, no name defined]                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eeeee...........eeee......eee..........eee.........eeeee.eeeee.hhh......hhhhhhh.....eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 1td3 C 412 VRIFAGNDPAHTATGSSGISSPTPALTPLMLDEATGKLVVWDGQKAGSAVGILVLPLEGTETALTYYKSGTFATEAIHWPESVDEHKKANAFAGSALSHAALP 514
                                   421       431       441       451       461       471       481       491       501       511

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

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Protein Domains( (-)

)

Organisms( (-)

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Class: All beta proteins (24004)

Fold: beta-clip (280)

Superfamily: Head decoration protein D (gpD, major capsid protein D) (6)

Family: Head decoration protein D (gpD, major capsid protein D) (6)

Protein domain: Head decoration protein D (gpD, major capsid protein D) (5)

Bacteriophage P21 [TaxId: 10711] (3)

1a	d1td3a_	A:
1b	d1td3b_	B:
1c	d1td3c_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Beta Barrel (4804)

Topology: Virus Head Decoration Protein; Chain: A, (6)

Homologous Superfamily: [code=2.40.300.10, no name defined] (6)

Enterobacteria phage p21. Organism_taxid: 10711. (1)

1a	1td3A00	A:12-114
1b	1td3B00	B:212-314
1c	1td3C00	C:412-514

(no "Pfam Domain" information available for 1TD3)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C (DECO_BPP21 | P36275)

cellular component
	GO:0019028		viral capsid		The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
	GO:0019012		virion		The complete fully infectious extracellular virus particle.

Asymmetric/Biological Unit
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(no "Sites" information available for 1td3)

	Cis Peptide Bonds
		Leu A:113 - Pro A:114	[ RasMol ]
		Leu B:313 - Pro B:314	[ RasMol ]
		Leu C:513 - Pro C:514	[ RasMol ]

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	1td3
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	DECO_BPP21 \| P36275
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	DECO_BPP21 \| P36275	:	1td0 1td4

1td4	SHP, H 3 SPACE GROUP

Description

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Ligands, Modified Residues, Ions (0, 0)

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 3)

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