1T6U - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   NICKEL SUPEROXIDE DISMUTASE (NISOD) NATIVE 1.30 A STRUCTURE

Authors :   D. P. Barondeau, C. J. Kassmann, C. K. Bruns, J. A. Tainer, E. D. Getzoff

Date :   07 May 04 (Deposition) - 13 Jul 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.30

Chains :   Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1: A,B,C,D,E,F  (1x)
Biol. Unit 2: G,H,I,J,K,L  (1x)

Keywords :   Nickel, 4-Helix Bundle, Hexamer, Superoxide Dismutase, Nisod, Sod, High Resolution, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. P. Barondeau, C. J. Kassmann, C. K. Bruns, J. A. Tainer, E. D. Getzoff
Nickel Superoxide Dismutase Structure And Mechanism.
Biochemistry V. 43 8038 2004
PubMed-ID: 15209499 | Reference-DOI: 10.1021/BI0496081
(for further references see the PDB file header)

Molecule 1 - SUPEROXIDE DISMUTASE [NI]
	Chains	:	A, B, C, D, E, F, G, H, I, J, K, L
	EC Number	:	1.15.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET26
	Expression System Strain	:	BL21(DE3)RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SODN, SOD1, SCO5254, 2SC7G11.16C
	Mutation	:	YES
	Organism Scientific	:	STREPTOMYCES COELICOLOR
	Organism Taxid	:	1902
	Synonym	:	NISOD, NICKEL- CONTAINING SUPEROXIDE DISMUTASE

		1	2	3	4	5	6	7	8	9	10	11	12
Asymmetric Unit	:	A	B	C	D	E	F	G	H	I	J	K	L
Biological Unit 1 (1x)	:	A	B	C	D	E	F
Biological Unit 2 (1x)	:							G	H	I	J	K	L

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 12)

No.	Name	Count	Type	Full Name
1	NI	12	Ligand/Ion	NICKEL (II) ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	NI	-1	Ligand/Ion	NICKEL (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	NI	-1	Ligand/Ion	NICKEL (II) ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:1 , CYS A:2 , CYS A:6	BINDING SITE FOR RESIDUE NI A 201
02	AC2	SOFTWARE	HIS B:1 , CYS B:2 , ASP B:3 , CYS B:6	BINDING SITE FOR RESIDUE NI B 202
03	AC3	SOFTWARE	HIS C:1 , CYS C:2 , CYS C:6	BINDING SITE FOR RESIDUE NI C 203
04	AC4	SOFTWARE	HIS D:1 , CYS D:2 , ASP D:3 , CYS D:6	BINDING SITE FOR RESIDUE NI D 204
05	AC5	SOFTWARE	HIS E:1 , CYS E:2 , CYS E:6	BINDING SITE FOR RESIDUE NI E 205
06	AC6	SOFTWARE	HIS F:1 , CYS F:2 , CYS F:6	BINDING SITE FOR RESIDUE NI F 206
07	AC7	SOFTWARE	HIS G:1 , CYS G:2 , CYS G:6	BINDING SITE FOR RESIDUE NI G 207
08	AC8	SOFTWARE	HIS H:1 , CYS H:2 , CYS H:6	BINDING SITE FOR RESIDUE NI H 208
09	AC9	SOFTWARE	HIS I:1 , CYS I:2 , CYS I:6	BINDING SITE FOR RESIDUE NI I 209
10	BC1	SOFTWARE	HIS J:1 , CYS J:2 , ASP J:3 , CYS J:6	BINDING SITE FOR RESIDUE NI J 210
11	BC2	SOFTWARE	HIS K:1 , CYS K:2 , CYS K:6	BINDING SITE FOR RESIDUE NI K 211
12	BC3	SOFTWARE	HIS L:1 , CYS L:2 , CYS L:6	BINDING SITE FOR RESIDUE NI L 212

(no "SS Bond" information available for 1T6U)

Asymmetric Unit

No.	Residues
1	Leu A:4	-	Pro A:5
2	Leu B:4	-	Pro B:5
3	Leu C:4	-	Pro C:5
4	Leu D:4	-	Pro D:5
5	Leu E:4	-	Pro E:5
6	Leu F:4	-	Pro F:5
7	Leu G:4	-	Pro G:5
8	Leu H:4	-	Pro H:5
9	Leu I:4	-	Pro I:5
10	Leu J:4	-	Pro J:5
11	Leu K:4	-	Pro K:5
12	Leu L:4	-	Pro L:5

(no "SAP(SNP)/Variant" information available for 1T6U)

(no "PROSITE Motif" information available for 1T6U)

(no "Exon" information available for 1T6U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6ua_ A: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uA00 A:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u A   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain B from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6ub_ B: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uB00 B:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u B   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain C from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6uc_ C: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uC00 C:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u C   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain D from PDB  Type:PROTEIN  Length:116
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKK 130
               SCOP domains d1t6ud_ D: Nickel-containing superoxide dismutase, NiSOD                                                             SCOP domains
               CATH domains 1t6uD00 D:1-116 Nickel-containing superoxide dismutase, NiSOD                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u D   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKK 116
                                    10        20        30        40        50        60        70        80        90       100       110

Chain E from PDB  Type:PROTEIN  Length:116
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKK 130
               SCOP domains d1t6ue_ E: Nickel-containing superoxide dismutase, NiSOD                                                             SCOP domains
               CATH domains 1t6uE00 E:1-116 Nickel-containing superoxide dismutase, NiSOD                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u E   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKK 116
                                    10        20        30        40        50        60        70        80        90       100       110

Chain F from PDB  Type:PROTEIN  Length:115
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:115
                                    24        34        44        54        64        74        84        94       104       114       124     
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETK 129
               SCOP domains d1t6uf_ F: Nickel-containing superoxide dismutase, NiSOD                                                            SCOP domains
               CATH domains 1t6uF00 F:1-115 Nickel-containing superoxide dismutase, NiSOD                                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u F   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETK 115
                                    10        20        30        40        50        60        70        80        90       100       110

Chain G from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6ug_ G: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uG00 G:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u G   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain H from PDB  Type:PROTEIN  Length:116
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKK 130
               SCOP domains d1t6uh_ H: Nickel-containing superoxide dismutase, NiSOD                                                             SCOP domains
               CATH domains 1t6uH00 H:1-116 Nickel-containing superoxide dismutase, NiSOD                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u H   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKK 116
                                    10        20        30        40        50        60        70        80        90       100       110

Chain I from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6ui_ I: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uI00 I:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u I   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain J from PDB  Type:PROTEIN  Length:117
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:117
                                    24        34        44        54        64        74        84        94       104       114       124       
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 131
               SCOP domains d1t6uj_ J: Nickel-containing superoxide dismutase, NiSOD                                                              SCOP domains
               CATH domains 1t6uJ00 J:1-117 Nickel-containing superoxide dismutase, NiSOD                                                         CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u J   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKKA 117
                                    10        20        30        40        50        60        70        80        90       100       110

Chain K from PDB  Type:PROTEIN  Length:116
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKK 130
               SCOP domains d1t6uk_ K: Nickel-containing superoxide dismutase, NiSOD                                                             SCOP domains
               CATH domains 1t6uK00 K:1-116 Nickel-containing superoxide dismutase, NiSOD                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u K   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKK 116
                                    10        20        30        40        50        60        70        80        90       100       110

Chain L from PDB  Type:PROTEIN  Length:116
 aligned with SODN_STRCO | P80735 from UniProtKB/Swiss-Prot  Length:131

    Alignment length:116
                                    24        34        44        54        64        74        84        94       104       114       124      
           SODN_STRCO    15 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKALSAAKGSKDPATGQKALDYIAQIDKIFWETKK 130
               SCOP domains d1t6ul_ L: Nickel-containing superoxide dismutase, NiSOD                                                             SCOP domains
               CATH domains 1t6uL00 L:1-116 Nickel-containing superoxide dismutase, NiSOD                                                        CATH domains
           Pfam domains (1) Sod_Ni-1t6uL01 L:1-115                                                                                             - Pfam domains (1)
           Pfam domains (2) Sod_Ni-1t6uL02 L:1-115                                                                                             - Pfam domains (2)
           Pfam domains (3) Sod_Ni-1t6uL03 L:1-115                                                                                             - Pfam domains (3)
           Pfam domains (4) Sod_Ni-1t6uL04 L:1-115                                                                                             - Pfam domains (4)
           Pfam domains (5) Sod_Ni-1t6uL05 L:1-115                                                                                             - Pfam domains (5)
           Pfam domains (6) Sod_Ni-1t6uL06 L:1-115                                                                                             - Pfam domains (6)
           Pfam domains (7) Sod_Ni-1t6uL07 L:1-115                                                                                             - Pfam domains (7)
           Pfam domains (8) Sod_Ni-1t6uL08 L:1-115                                                                                             - Pfam domains (8)
           Pfam domains (9) Sod_Ni-1t6uL09 L:1-115                                                                                             - Pfam domains (9)
          Pfam domains (10) Sod_Ni-1t6uL10 L:1-115                                                                                             - Pfam domains (10)
          Pfam domains (11) Sod_Ni-1t6uL11 L:1-115                                                                                             - Pfam domains (11)
          Pfam domains (12) Sod_Ni-1t6uL12 L:1-115                                                                                             - Pfam domains (12)
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 1t6u L   1 HCDLPCGVYDPAQARIEAESVKAVQEKMAGNDDPHFQTRATVIKEQRAELAKHHVSVLWSDYFKPPHFEKYPELHQLVNDTLKAMSAAKGSKDPATGQKALDYIAQIDKIFWETKK 116
                                    10        20        30        40        50        60        70        80        90       100       110

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Four-helical up-and-down bundle (308)

Superfamily: Nickel-containing superoxide dismutase, NiSOD (11)

Family: Nickel-containing superoxide dismutase, NiSOD (11)

Protein domain: Nickel-containing superoxide dismutase, NiSOD (8)

Streptomyces coelicolor [TaxId: 1902] (3)

1a	d1t6ua_	A:
1b	d1t6ub_	B:
1c	d1t6uk_	K:
1d	d1t6ul_	L:
1e	d1t6uc_	C:
1f	d1t6ud_	D:
1g	d1t6ue_	E:
1h	d1t6uf_	F:
1i	d1t6ug_	G:
1j	d1t6uh_	H:
1k	d1t6ui_	I:
1l	d1t6uj_	J:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Up-down Bundle (3216)

Topology: Four Helix Bundle (Hemerythrin (Met), subunit A) (300)

Homologous Superfamily: Nickel-containing superoxide dismutase, NiSOD (11)

Streptomyces coelicolor. Organism_taxid: 1902. (6)

1a	1t6uD00	D:1-116
1b	1t6uE00	E:1-116
1c	1t6uJ00	J:1-117
1d	1t6uF00	F:1-115
1e	1t6uH00	H:1-116
1f	1t6uK00	K:1-116
1g	1t6uL00	L:1-116
1h	1t6uA00	A:1-117
1i	1t6uB00	B:1-117
1j	1t6uC00	C:1-117
1k	1t6uG00	G:1-117
1l	1t6uI00	I:1-117

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Sod_Ni] (8)

Family: Sod_Ni (8)

Streptomyces coelicolor (3)

1a	Sod_Ni-1t6uL01	L:1-115
1b	Sod_Ni-1t6uL02	L:1-115
1c	Sod_Ni-1t6uL03	L:1-115
1d	Sod_Ni-1t6uL04	L:1-115
1e	Sod_Ni-1t6uL05	L:1-115
1f	Sod_Ni-1t6uL06	L:1-115
1g	Sod_Ni-1t6uL07	L:1-115
1h	Sod_Ni-1t6uL08	L:1-115
1i	Sod_Ni-1t6uL09	L:1-115
1j	Sod_Ni-1t6uL10	L:1-115
1k	Sod_Ni-1t6uL11	L:1-115
1l	Sod_Ni-1t6uL12	L:1-115

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H,I,J,K,L (SODN_STRCO | P80735)

molecular function
	GO:0016209	antioxidant activity	Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0016151	nickel cation binding	Interacting selectively and non-covalently with nickel (Ni) cations.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0004784	superoxide dismutase activity	Catalysis of the reaction: 2 superoxide + 2 H+ = O2 + hydrogen peroxide.
biological process
	GO:0098869	cellular oxidant detoxification	Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0019430	removal of superoxide radicals	Any process, acting at the cellular level, involved in removing superoxide radicals (O2-) from a cell or organism, e.g. by conversion to dioxygen (O2) and hydrogen peroxide (H2O2).
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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Access by PDB/NDB ID
	1t6u
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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	SODN_STRCO \| P80735
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	1.15.1.1
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	SODN_STRCO \| P80735
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	SODN_STRCO \| P80735	:	1t6i 1t6q 3g4x 3g4z 3g50 4ncq

1t6i	NICKEL SUPEROXIDE DISMUTASE (NISOD) APO STRUCTURE
1t6q	NICKEL SUPEROXIDE DISMUTASE (NISOD) CN-TREATED APO STRUCTURE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (12, 12)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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SCOP Domains (1, 12)

CATH Domains (1, 12)

Pfam Domains (1, 12)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File