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Sequence, Chains, Asymmetric and Biological Units

Title NICKEL SUPEROXIDE DISMUTASE (NISOD) NATIVE 1.30 A STRUCTURE
Keywords NICKEL, 4-HELIX BUNDLE, HEXAMER, SUPEROXIDE DISMUTASE, NISOD HIGH RESOLUTION, OXIDOREDUCTASE
Experiment X-ray diffraction
Number of Models  1


   Database       ID code    StatusCoordinate files
        Header     Asymmetric unit     Biological unit  

PDB   1T6U     released     available     available     Quaternary Structure Server  


Asymmetric unit from PDB
 Unit     Type     Name   Chain ID   Residues   Atoms   Hetatoms 
1  Protein   SUPEROXIDE DISMUTASE [NI]  A 120 4653 3
2  Protein   SUPEROXIDE DISMUTASE [NI]  B 117 932 0
3  Protein   SUPEROXIDE DISMUTASE [NI]  C 120 4653 3
4  Protein   SUPEROXIDE DISMUTASE [NI]  D 116 926 0
5  Protein   SUPEROXIDE DISMUTASE [NI]  E 116 926 0
6  Protein   SUPEROXIDE DISMUTASE [NI]  F 115 917 0
7  Protein   SUPEROXIDE DISMUTASE [NI]  G 120 4653 3
8  Protein   SUPEROXIDE DISMUTASE [NI]  H 116 926 0
9  Protein   SUPEROXIDE DISMUTASE [NI]  I 120 4653 3
10  Protein   SUPEROXIDE DISMUTASE [NI]  J 117 932 0
11  Protein   SUPEROXIDE DISMUTASE [NI]  K 120 4653 3
12  Protein   SUPEROXIDE DISMUTASE [NI]  L 116 926 0
13  Protein   SUPEROXIDE DISMUTASE [NI]  A 120 4653 3
14  Ligand   SUPEROXIDE DISMUTASE [NI]  B 1 0 1
15  Protein   SUPEROXIDE DISMUTASE [NI]  C 120 4653 3
16  Ligand   SUPEROXIDE DISMUTASE [NI]  D 1 0 1
17  Protein   SUPEROXIDE DISMUTASE [NI]  E 120 4653 3
18  Ligand   SUPEROXIDE DISMUTASE [NI]  F 1 0 1
19  Ligand   SUPEROXIDE DISMUTASE [NI]  G 1 0 1
20  Ligand   SUPEROXIDE DISMUTASE [NI]  H 1 0 1
21  Ligand   SUPEROXIDE DISMUTASE [NI]  I 1 0 1
22  Ligand   SUPEROXIDE DISMUTASE [NI]  J 1 0 1
23  Ligand   SUPEROXIDE DISMUTASE [NI]  K 1 0 1
24  Ligand   SUPEROXIDE DISMUTASE [NI]  L 1 0 1
25 Water     1926 0 1926
total       3708 43709 1959

Proteins
Unit 1 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 2 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117
Unit 3 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 4 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116
Unit 5 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116
Unit 6 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115
Unit 7 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 8 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116
Unit 9 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 10 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117
Unit 11 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 12 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116
Unit 13 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 15 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205
Unit 17 HIS1 CYS2 ASP3 LEU4 PRO5 CYS6 GLY7 VAL8 TYR9 ASP10 PRO11 ALA12 GLN13 ALA14 ARG15 ILE16 GLU17 ALA18 GLU19 SER20 VAL21 LYS22 ALA23 VAL24 GLN25 GLU26 LYS27 MET28 ALA29 GLY30 ASN31 ASP32 ASP33 PRO34 HIS35 PHE36 GLN37 THR38 ARG39 ALA40 THR41 VAL42 ILE43 LYS44 GLU45 GLN46 ARG47 ALA48 GLU49 LEU50 ALA51 LYS52 HIS53 HIS54 VAL55 SER56 VAL57 LEU58 TRP59 SER60 ASP61 TYR62 PHE63 LYS64 PRO65 PRO66 HIS67 PHE68 GLU69 LYS70 TYR71 PRO72 GLU73 LEU74 HIS75 GLN76 LEU77 VAL78 ASN79 ASP80 THR81 LEU82 LYS83 ALA84 MET85 SER86 ALA87 ALA88 LYS89 GLY90 SER91 LYS92 ASP93 PRO94 ALA95 THR96 GLY97 GLN98 LYS99 ALA100 LEU101 ASP102 TYR103 ILE104 ALA105 GLN106 ILE107 ASP108 LYS109 ILE110 PHE111 TRP112 GLU113 THR114 LYS115 LYS116 ALA117 NI201 NI203 NI205

Ligands
Unit 14 NI202
Unit 16 NI204
Unit 18 NI206
Unit 19 NI207
Unit 20 NI208
Unit 21 NI209
Unit 22 NI210
Unit 23 NI211
Unit 24 NI212

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Perl script:    PDBscan.pl  (15 Sep 2016)
Author:    Peter Slickers  (slickers@leibniz-fli.de),  IMB Jena,  Germany