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(-) Description

Title :  SOLUTION STRUCTURE OF A UBIQUITIN-LIKE DOMAIN FROM TUBULIN-BINDING COFACTOR B
 
Authors :  B. L. Lytle, F. C. Peterson, S. H. Qui, M. Luo, B. F. Volkman, J. L. Markley, Center For Eukaryotic Structural Genomics (Cesg
Date :  13 Apr 04  (Deposition) - 27 Apr 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ubiquitin-Like, Cytoskeleton, Microtubule, Tubulin, Cesg, Structural Genomics, Protein Structure Initiative, Psi, Center For Eukaryotic Structural Genomics, Chaperone (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. L. Lytle, F. C. Peterson, S. H. Qiu, M. Luo, Q. Zhao, J. L. Markley, B. F. Volkman
Solution Structure Of A Ubiquitin-Like Domain From Tubulin-Binding Cofactor B.
J. Biol. Chem. V. 279 46787 2004
PubMed-ID: 15364906  |  Reference-DOI: 10.1074/JBC.M409422200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TUBULIN FOLDING COFACTOR B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30T
    Expression System Strain: SG13009[PREP4]
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL UBIQUITIN-LIKE DOMAIN
    Gene: 5O73 OR F53F4.3
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Synonym: TUBULIN-SPECIFIC CHAPERONE B, CYTOSKELETON- ASSOCIATED PROTEIN 1, CKAP1

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:PROTEIN  Length:90
 aligned with TBCB_CAEEL | Q20728 from UniProtKB/Swiss-Prot  Length:229

    Alignment length:90
                                    10        20        30        40        50        60        70        80        90
            TBCB_CAEEL    1 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGNED 90
               SCOP domains d1t0ya_ A: Ubiquitin-like domain of tubulin folding cofactor B                             SCOP domains
               CATH domains 1t0yA00 A:1-90 Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee......eeeeee...hhhhhhhhhhhhhh.....eeeeee.....eeee................eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                  1t0y A  1 MTEVYDLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGAKSLKDLGVRDGYRIHAVDVTGGNED 90
                                    10        20        30        40        50        60        70        80        90
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1T0Y)

(-) Gene Ontology  (3, 3)

NMR Structure(hide GO term definitions)
Chain A   (TBCB_CAEEL | Q20728)
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005874    microtubule    Any of the long, generally straight, hollow tubes of internal diameter 12-15 nm and external diameter 24 nm found in a wide variety of eukaryotic cells; each consists (usually) of 13 protofilaments of polymeric tubulin, staggered in such a manner that the tubulin monomers are arranged in a helical pattern on the microtubular surface, and with the alpha/beta axes of the tubulin subunits parallel to the long axis of the tubule; exist in equilibrium with pool of tubulin monomers and can be rapidly assembled or disassembled in response to physiological stimuli; concerned with force generation, e.g. in the spindle.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBCB_CAEEL | Q20728: 1lpl 1tov

(-) Related Entries Specified in the PDB File

1lpl CAP-GLY DOMAIN OF F53F4.3 RELATED ID: GO.33910 RELATED DB: TARGETDB