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(-) Description

Title :  SCAPHARCA TETRAMERIC HEMOGLOBIN, CO-STATE
 
Authors :  W. E. Royer
Date :  28 Oct 12  (Deposition) - 13 Mar 13  (Release) - 08 Jan 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.25
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B,C,D  (1x)
Biol. Unit 2:  E,F,G,H  (1x)
Keywords :  Hemoglobin, Oxygen Transport, Globin Fold, Oxygen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Ronda, S. Bettati, E. R. Henry, T. Kashav, J. M. Sanders, W. E. Royer, A. Mozzarelli
Tertiary And Quaternary Allostery In Tetrameric Hemoglobin From Scapharca Inaequivalvis.
Biochemistry V. 52 2108 2013
PubMed-ID: 23458680  |  Reference-DOI: 10.1021/BI301620X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GLOBIN-2 A CHAIN
    Chains: A, C, E, G
    Organism Common: INEQUIVALVE ARK
    Organism Scientific: SCAPHARCA INAEQUIVALVIS
    Organism Taxid: 6561
    Other Details: BLOOD CLAM
    Strain: SCAPHARCA INAEQUIVALVIS
    Synonym: GLOBIN II A CHAIN, HBII-A
 
Molecule 2 - HEMOGLOBIN B CHAIN
    Chains: B, D, F, H
    Organism Common: INEQUIVALVE ARK
    Organism Scientific: SCAPHARCA INAEQUIVALVIS
    Organism Taxid: 6561
    Other Details: BLOOD CLAM
    Strain: SCAPHARCA INAEQUIVALVIS

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): ABCD    
Biological Unit 2 (1x):     EFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1ACE4Mod. Amino AcidACETYL GROUP
2CMO8Ligand/IonCARBON MONOXIDE
3HEM8Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CMO4Ligand/IonCARBON MONOXIDE
3HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE
Biological Unit 2 (3, 10)
No.NameCountTypeFull Name
1ACE2Mod. Amino AcidACETYL GROUP
2CMO4Ligand/IonCARBON MONOXIDE
3HEM4Ligand/IonPROTOPORPHYRIN IX CONTAINING FE

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:50 , PHE A:51 , ARG A:53 , HIS A:69 , LEU A:73 , LEU A:77 , PHE A:97 , ASN A:100 , HIS A:101 , ARG A:104 , ALA A:110 , PHE A:111 , CMO A:202 , HOH A:306 , HOH A:345 , HOH A:386 , HOH A:431 , HOH A:449 , HOH A:462 , LYS B:98 , ASN B:102BINDING SITE FOR RESIDUE HEM A 201
02AC2SOFTWAREMET A:37 , PHE A:51 , HIS A:69 , LEU A:73 , HEM A:201BINDING SITE FOR RESIDUE CMO A 202
03AC3SOFTWARELYS A:96 , ASN A:100 , LYS B:52 , PHE B:53 , ARG B:55 , HIS B:71 , LEU B:75 , PHE B:99 , ASN B:102 , HIS B:103 , ARG B:106 , GLU B:112 , PHE B:113 , CMO B:202 , HOH B:344 , HOH B:380 , HOH B:460BINDING SITE FOR RESIDUE HEM B 201
04AC4SOFTWAREMET B:39 , PHE B:53 , HIS B:71 , LEU B:75 , HEM B:201BINDING SITE FOR RESIDUE CMO B 202
05AC5SOFTWARETYR C:50 , PHE C:51 , ARG C:53 , HIS C:69 , LEU C:73 , PHE C:97 , HIS C:101 , ARG C:104 , ALA C:110 , PHE C:111 , CMO C:202 , HOH C:322 , HOH C:389 , HOH C:391 , HOH C:409 , LYS D:98 , ASN D:102 , HEM D:201BINDING SITE FOR RESIDUE HEM C 201
06AC6SOFTWAREPHE C:51 , HIS C:69 , LEU C:73 , HEM C:201BINDING SITE FOR RESIDUE CMO C 202
07AC7SOFTWARELYS C:96 , ASN C:100 , HEM C:201 , HOH C:391 , LYS D:52 , PHE D:53 , ARG D:55 , HIS D:71 , LEU D:75 , ASN D:102 , HIS D:103 , ARG D:106 , ILE D:108 , GLU D:112 , PHE D:113 , CMO D:202 , HOH D:351 , HOH D:354 , HOH D:396 , HOH D:536BINDING SITE FOR RESIDUE HEM D 201
08AC8SOFTWAREPHE D:53 , HIS D:71 , HEM D:201BINDING SITE FOR RESIDUE CMO D 202
09AC9SOFTWARETYR E:50 , PHE E:51 , ARG E:53 , HIS E:69 , LEU E:73 , LEU E:77 , PHE E:97 , ASN E:100 , HIS E:101 , ARG E:104 , ILE E:106 , ALA E:110 , PHE E:111 , CMO E:202 , HOH E:310 , HOH E:350 , LYS F:98 , ASN F:102 , HOH F:376 , HOH F:456BINDING SITE FOR RESIDUE HEM E 201
10BC1SOFTWAREMET E:37 , PHE E:51 , HIS E:69 , LEU E:73 , HEM E:201BINDING SITE FOR RESIDUE CMO E 202
11BC2SOFTWARELYS E:96 , ASN E:100 , HOH E:353 , LYS F:52 , PHE F:53 , ARG F:55 , HIS F:71 , LEU F:75 , PHE F:99 , ASN F:102 , HIS F:103 , ARG F:106 , GLU F:112 , PHE F:113 , CMO F:202 , HOH F:315 , HOH F:391 , HOH F:439 , HOH F:456 , HOH F:516BINDING SITE FOR RESIDUE HEM F 201
12BC3SOFTWAREMET F:39 , PHE F:53 , HIS F:71 , LEU F:75 , HEM F:201BINDING SITE FOR RESIDUE CMO F 202
13BC4SOFTWARETHR G:47 , TYR G:50 , PHE G:51 , ARG G:53 , HIS G:69 , LEU G:73 , PHE G:97 , ASN G:100 , HIS G:101 , ARG G:104 , ALA G:110 , PHE G:111 , CMO G:202 , HOH G:341 , HOH G:384 , HOH G:390 , HOH G:549 , LYS H:98 , ASN H:102 , HEM H:201 , HOH H:386BINDING SITE FOR RESIDUE HEM G 201
14BC5SOFTWAREHIS G:69 , HIS G:101 , HEM G:201BINDING SITE FOR RESIDUE CMO G 202
15BC6SOFTWARELYS G:96 , ASN G:100 , HEM G:201 , HOH G:384 , HOH G:441 , LYS H:52 , PHE H:53 , ARG H:55 , HIS H:71 , LEU H:75 , ASN H:102 , HIS H:103 , ARG H:106 , GLU H:112 , PHE H:113 , CMO H:202 , HOH H:329 , HOH H:336 , HOH H:419BINDING SITE FOR RESIDUE HEM H 201
16BC7SOFTWAREPHE H:53 , HIS H:71 , HEM H:201BINDING SITE FOR RESIDUE CMO H 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4HRR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4HRR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4HRR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4HRR)

(-) Exons   (0, 0)

(no "Exon" information available for 4HRR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4hrra_ A: Hemoglobin I                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrr A   0 xVDAAVAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGVVQAAL 149
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
                            |                                                                                                                                                     
                            0-ACE                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4hrrb_ B: Hemoglobin I                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hrr B   1 SRVAELANAVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLVAVVQAAL 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 


Chain C from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4hrrc_ C: Hemoglobin I                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrr C   0 xVDAAVAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGVVQAAL 149
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
                            0-ACE                                                                                                                                                 


Chain D from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4hrrd_ D: Hemoglobin I                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hrr D   1 SRVAELANAVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLVAVVQAAL 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 


Chain E from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4hrre_ E: Hemoglobin I                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrr E   0 xVDAAVAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGVVQAAL 149
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
                            0-ACE                                                                                                                                                 


Chain F from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains d4hrrf_ F: Hemoglobin I                                                                                                                                 SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4hrr F   1 SRVAELANAVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLVAVVQAAL 151
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150 


Chain G from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4hrrg_ G: Hemoglobin I                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrr G   0 xVDAAVAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTYFTRLGDVQKGKANSKLRGHAITLTYALNNFVDSLDDPSRLKCVVEKFAVNHINRKISGDAFGAIVEPMKETLKARMGNYYSDDVAGAWAALVGVVQAAL 149
                            |        9        19        29        39        49        59        69        79        89        99       109       119       129       139       149
                            0-ACE                                                                                                                                                 


Chain H from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains d4hrrh_ H: Hemoglobin I                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 4hrr H   2 RVAELANAVVSNADQKDLLRMSWGVLSVDMEGTGLMLMANLFKTSPSAKGKFARLGDVSAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQISADEFGEIVGPLRQTLKARMGNYFDEDTVAAWASLVAVVQAAL 151
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0 ; only for superseded entry 1SCT: 1,8)

(no "CATH Domain" information available for 4HRR, only for superseded entry 1SCT replaced by 4HRR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4HRR)

(-) Gene Ontology  (6, 17)

Asymmetric Unit(hide GO term definitions)

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  4hrr
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  GLB2B_ANAIN | P14822
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        GLB2A_ANAIN | P14821: 4hrt
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(-) Related Entries Specified in the PDB File

4hrt