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4HRR
Asym. Unit
Info
Asym.Unit (491 KB)
Biol.Unit 1 (243 KB)
Biol.Unit 2 (245 KB)
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(1)
Title
:
SCAPHARCA TETRAMERIC HEMOGLOBIN, CO-STATE
Authors
:
W. E. Royer
Date
:
28 Oct 12 (Deposition) - 13 Mar 13 (Release) - 08 Jan 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.25
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B,C,D (1x)
Biol. Unit 2: E,F,G,H (1x)
Keywords
:
Hemoglobin, Oxygen Transport, Globin Fold, Oxygen
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
L. Ronda, S. Bettati, E. R. Henry, T. Kashav, J. M. Sanders, W. E. Royer, A. Mozzarelli
Tertiary And Quaternary Allostery In Tetrameric Hemoglobin From Scapharca Inaequivalvis.
Biochemistry V. 52 2108 2013
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(3, 20)
Info
All Hetero Components
1a: ACETYL GROUP (ACEa)
1b: ACETYL GROUP (ACEb)
1c: ACETYL GROUP (ACEc)
1d: ACETYL GROUP (ACEd)
2a: CARBON MONOXIDE (CMOa)
2b: CARBON MONOXIDE (CMOb)
2c: CARBON MONOXIDE (CMOc)
2d: CARBON MONOXIDE (CMOd)
2e: CARBON MONOXIDE (CMOe)
2f: CARBON MONOXIDE (CMOf)
2g: CARBON MONOXIDE (CMOg)
2h: CARBON MONOXIDE (CMOh)
3a: PROTOPORPHYRIN IX CONTAINING FE (HEMa)
3b: PROTOPORPHYRIN IX CONTAINING FE (HEMb)
3c: PROTOPORPHYRIN IX CONTAINING FE (HEMc)
3d: PROTOPORPHYRIN IX CONTAINING FE (HEMd)
3e: PROTOPORPHYRIN IX CONTAINING FE (HEMe)
3f: PROTOPORPHYRIN IX CONTAINING FE (HEMf)
3g: PROTOPORPHYRIN IX CONTAINING FE (HEMg)
3h: PROTOPORPHYRIN IX CONTAINING FE (HEMh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACE
4
Mod. Amino Acid
ACETYL GROUP
2
CMO
8
Ligand/Ion
CARBON MONOXIDE
3
HEM
8
Ligand/Ion
PROTOPORPHYRIN IX CONTAINING FE
[
close Hetero Component info
]
Sites
(16, 16)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
TYR A:50 , PHE A:51 , ARG A:53 , HIS A:69 , LEU A:73 , LEU A:77 , PHE A:97 , ASN A:100 , HIS A:101 , ARG A:104 , ALA A:110 , PHE A:111 , CMO A:202 , HOH A:306 , HOH A:345 , HOH A:386 , HOH A:431 , HOH A:449 , HOH A:462 , LYS B:98 , ASN B:102
BINDING SITE FOR RESIDUE HEM A 201
02
AC2
SOFTWARE
MET A:37 , PHE A:51 , HIS A:69 , LEU A:73 , HEM A:201
BINDING SITE FOR RESIDUE CMO A 202
03
AC3
SOFTWARE
LYS A:96 , ASN A:100 , LYS B:52 , PHE B:53 , ARG B:55 , HIS B:71 , LEU B:75 , PHE B:99 , ASN B:102 , HIS B:103 , ARG B:106 , GLU B:112 , PHE B:113 , CMO B:202 , HOH B:344 , HOH B:380 , HOH B:460
BINDING SITE FOR RESIDUE HEM B 201
04
AC4
SOFTWARE
MET B:39 , PHE B:53 , HIS B:71 , LEU B:75 , HEM B:201
BINDING SITE FOR RESIDUE CMO B 202
05
AC5
SOFTWARE
TYR C:50 , PHE C:51 , ARG C:53 , HIS C:69 , LEU C:73 , PHE C:97 , HIS C:101 , ARG C:104 , ALA C:110 , PHE C:111 , CMO C:202 , HOH C:322 , HOH C:389 , HOH C:391 , HOH C:409 , LYS D:98 , ASN D:102 , HEM D:201
BINDING SITE FOR RESIDUE HEM C 201
06
AC6
SOFTWARE
PHE C:51 , HIS C:69 , LEU C:73 , HEM C:201
BINDING SITE FOR RESIDUE CMO C 202
07
AC7
SOFTWARE
LYS C:96 , ASN C:100 , HEM C:201 , HOH C:391 , LYS D:52 , PHE D:53 , ARG D:55 , HIS D:71 , LEU D:75 , ASN D:102 , HIS D:103 , ARG D:106 , ILE D:108 , GLU D:112 , PHE D:113 , CMO D:202 , HOH D:351 , HOH D:354 , HOH D:396 , HOH D:536
BINDING SITE FOR RESIDUE HEM D 201
08
AC8
SOFTWARE
PHE D:53 , HIS D:71 , HEM D:201
BINDING SITE FOR RESIDUE CMO D 202
09
AC9
SOFTWARE
TYR E:50 , PHE E:51 , ARG E:53 , HIS E:69 , LEU E:73 , LEU E:77 , PHE E:97 , ASN E:100 , HIS E:101 , ARG E:104 , ILE E:106 , ALA E:110 , PHE E:111 , CMO E:202 , HOH E:310 , HOH E:350 , LYS F:98 , ASN F:102 , HOH F:376 , HOH F:456
BINDING SITE FOR RESIDUE HEM E 201
10
BC1
SOFTWARE
MET E:37 , PHE E:51 , HIS E:69 , LEU E:73 , HEM E:201
BINDING SITE FOR RESIDUE CMO E 202
11
BC2
SOFTWARE
LYS E:96 , ASN E:100 , HOH E:353 , LYS F:52 , PHE F:53 , ARG F:55 , HIS F:71 , LEU F:75 , PHE F:99 , ASN F:102 , HIS F:103 , ARG F:106 , GLU F:112 , PHE F:113 , CMO F:202 , HOH F:315 , HOH F:391 , HOH F:439 , HOH F:456 , HOH F:516
BINDING SITE FOR RESIDUE HEM F 201
12
BC3
SOFTWARE
MET F:39 , PHE F:53 , HIS F:71 , LEU F:75 , HEM F:201
BINDING SITE FOR RESIDUE CMO F 202
13
BC4
SOFTWARE
THR G:47 , TYR G:50 , PHE G:51 , ARG G:53 , HIS G:69 , LEU G:73 , PHE G:97 , ASN G:100 , HIS G:101 , ARG G:104 , ALA G:110 , PHE G:111 , CMO G:202 , HOH G:341 , HOH G:384 , HOH G:390 , HOH G:549 , LYS H:98 , ASN H:102 , HEM H:201 , HOH H:386
BINDING SITE FOR RESIDUE HEM G 201
14
BC5
SOFTWARE
HIS G:69 , HIS G:101 , HEM G:201
BINDING SITE FOR RESIDUE CMO G 202
15
BC6
SOFTWARE
LYS G:96 , ASN G:100 , HEM G:201 , HOH G:384 , HOH G:441 , LYS H:52 , PHE H:53 , ARG H:55 , HIS H:71 , LEU H:75 , ASN H:102 , HIS H:103 , ARG H:106 , GLU H:112 , PHE H:113 , CMO H:202 , HOH H:329 , HOH H:336 , HOH H:419
BINDING SITE FOR RESIDUE HEM H 201
16
BC7
SOFTWARE
PHE H:53 , HIS H:71 , HEM H:201
BINDING SITE FOR RESIDUE CMO H 202
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
[
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d4hrra_ (A:)
1b: SCOP_d4hrrg_ (G:)
1c: SCOP_d4hrrh_ (H:)
1d: SCOP_d4hrrb_ (B:)
1e: SCOP_d4hrrc_ (C:)
1f: SCOP_d4hrrd_ (D:)
1g: SCOP_d4hrre_ (E:)
1h: SCOP_d4hrrf_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Globin-like
(1351)
Superfamily
:
Globin-like
(1308)
Family
:
Globins
(1157)
Protein domain
:
Hemoglobin I
(40)
Ark clam (Scapharca inaequivalvis) [TaxId: 6561]
(36)
1a
d4hrra_
A:
1b
d4hrrg_
G:
1c
d4hrrh_
H:
1d
d4hrrb_
B:
1e
d4hrrc_
C:
1f
d4hrrd_
D:
1g
d4hrre_
E:
1h
d4hrrf_
F:
[
close SCOP info
]
CATH Domains
(0, 0 ; only for superseded entry 1SCT: 1,8)
Info
all CATH domains
1a: CATH_1sctA00 ()
1b: CATH_1sctC00 ()
1c: CATH_1sctE00 ()
1d: CATH_1sctG00 ()
1e: CATH_1sctB00 ()
1f: CATH_1sctD00 ()
1g: CATH_1sctF00 ()
1h: CATH_1sctH00 ()
View:
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Label:
Sorry, no Info available
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Sorry, no Info available
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Atom Selection
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Protein & NOT Site
Protein & NOT PROSITE
Chain A
Chain B
Chain C
Chain D
Chain E
Chain F
Chain G
Chain H
Asymmetric Unit 1
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select all 'ALA' residues (Alanines) in chain 'A'
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select residue range 5 to 10 in all chains
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select residue range 5 to 10 in chain 'A'
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show SS bonds with a radius of 100 units (=0.4Å)
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Asym.Unit (491 KB)
Header - Asym.Unit
Biol.Unit 1 (243 KB)
Header - Biol.Unit 1
Biol.Unit 2 (245 KB)
Header - Biol.Unit 2
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