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(-) Description

Title :  STRUCTURE OF ARGININE DEIMINASE
 
Authors :  A. Galkin, L. Kulakova, E. Sarikaya, K. Lim, A. Howard, O. Herzberg, Str Function Project (S2F)
Date :  18 Dec 03  (Deposition) - 13 Jan 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (2x)
Biol. Unit 2:  C,D  (2x)
Biol. Unit 3:  D  (2x)
Biol. Unit 4:  A (1x),B (1x)
Biol. Unit 5:  C  (2x)
Keywords :  Arginine Degradation Pathway, L-Arginine Deiminase, Catalytic Mechanism, Structure 2 Function Project, S2F, Structural Genomics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Galkin, L. Kulakova, E. Sarikaya, K. Lim, A. Howard, O. Herzberg
Structural Insight Into Arginine Degradation By Arginine Deiminase, An Antibacterial And Parasite Drug Target.
J. Biol. Chem. V. 279 14001 2004
PubMed-ID: 14701825  |  Reference-DOI: 10.1074/JBC.M313410200

(-) Compounds

Molecule 1 - ARGININE DEIMINASE
    Chains: A, B, C, D
    EC Number: 3.5.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET100-ADIH
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 562
    Expression System Vector Type: PET100/D-TOPO
    Gene: ARCA, PA5171
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Synonym: ADI, ARGININE DIHYDROLASE, AD

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (2x): AB  
Biological Unit 2 (2x):   CD
Biological Unit 3 (2x):    D
Biological Unit 4 (1x): A (1x)B (1x)  
Biological Unit 5 (2x):   C 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 40)

Asymmetric Unit (1, 40)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 40)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 40)
No.NameCountTypeFull Name
1MSE40Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 10)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 20)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1RXX)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RXX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RXX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RXX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RXX)

(-) Exons   (0, 0)

(no "Exon" information available for 1RXX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:408
 aligned with ARCA_PSEAE | P13981 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:412
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           ARCA_PSEAE     6 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPID 417
               SCOP domains d1rxxa_ A: Arginine deiminase                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1rxxA01 A:6-71,A:157-417                                          -------------------------------------------------------------------------------------1rxxA01 A:6-71,A:157-417 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......eeeeee...hhhhhh.....hhhhh.....hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhee.hhh..hhhhhhhhhhhhhh....eee..hhhhhh....eee...eeee....hhhhhhhhhhhhhhhhhhhhhhh...eeee............hhh.eeeee..eeeeee....hhhhhhhhhhhhhhh....eeeeee...--...hhhhheeeee..eeeehhhhhh..eeeeeee.......eeeee...hhhhhhhhhh.....eeee......--...........eeee..eeeee..hhhhhhhhhhh..eeeee................eeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rxx A   6 TKLGVHSEAGKLRKVmVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKmRERGIDVLEmHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKmYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPmYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVmPIGNGVVLIGmGERSSRQAIGQVAQSLFAKGAAERVIVAGLPK--AAmHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGmNIRREEKTFLEVVAESLGLKKLRVVETGGNSF--EREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCmTCPIVRDPID 417
                                    15     |  25        35        45        55      | 65      | 75        85        95       105       115       125       135       145       155       165       175    |  185       195       205       215       225   |   235    |  245       255       265      |275 |     285       295       305       315|      325       335       345  |  | 355       365       375       385       395       405 |     415  
                                          21-MSE                                   62-MSE    72-MSE                                                                143-MSE                              180-MSE                                          229-MSE    240-MSE                         272  | |                                    316-MSE                         348  |                                                     407-MSE      
                                                                                                                                                                                                                                                                                                       275 |                                                                       351                                                                  
                                                                                                                                                                                                                                                                                                         277-MSE                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:404
 aligned with ARCA_PSEAE | P13981 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:413
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415   
           ARCA_PSEAE     6 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPIDY 418
               SCOP domains d1rxxb_ B: Arginine deiminase                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1rxxB01 B:6-71,B:157-418                                          -------------------------------------------------------------------------------  ----1rxxB01 B:6-71,B:157-418 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......eeeeee...hhhhhh...............hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh.hhhhh..hhhhhhhhhhhhhhh.--.....hhhhhh....eeee..eeee....hhhhhhhhhhhhhhhhhhhhhhh...eeee............hhh.eeeee..eeeeee....hhhhhhhhhhhhhhh....eeeeee...--...hhhhheeeee..eeeehhhhhh..eeeeeee.......eeeee...hhhhhhhhhh.....eeee....-----..........eeee..eeeee..hhhhhhhhhhh..eeeee................eeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rxx B   6 TKLGVHSEAGKLRKVmVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKmRERGIDVLEmHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKmYREYLGH--FLLPPLPNTQFTRDTTCWIYGGVTLNPmYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVmPIGNGVVLIGmGERSSRQAIGQVAQSLFAKGAAERVIVAGLPK--AAmHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGmNIRREEKTFLEVVAESLGLKKLRVVETGGN-----REQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCmTCPIVRDPIDY 418
                                    15     |  25        35        45        55      | 65      | 75        85        95       105       115       125       135       145    |  155       165       175    |  185       195       205       215       225   |   235    |  245       255       265      |275 |     285       295       305       315|      325       335       345|     |355       365       375       385       395       405 |     415   
                                          21-MSE                                   62-MSE    72-MSE                                                                143-MSE150  |                        180-MSE                                          229-MSE    240-MSE                         272  | |                                    316-MSE                       346   352                                                    407-MSE       
                                                                                                                                                                             153                                                                                                                       275 |                                                                                                                                             
                                                                                                                                                                                                                                                                                                         277-MSE                                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:412
 aligned with ARCA_PSEAE | P13981 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:413
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415   
           ARCA_PSEAE     6 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPIDY 418
               SCOP domains d1rxxc_ C: Arginine deiminase                                                                                                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1rxxC01 C:6-71,C:157-418                                          -------------------------------------------------------------------------------------1rxxC01 C:6-71,C:157-418 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......eeeeee...hhhhhh...............hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhee.hhh..hhhhhhhhhhhhhhh...eee..hhhhhh....eee...eeee....hhhhhhhhhhhhhhhhhh........eeee............hhh.eeeee..eeeeee....hhhhhhhhhhhhhhh....eeeeee........hhhhheeeee..eeeehhhhhh..eeeeeee.......eeeee...hhhhhhhhhh.....eeee.........-.........eeee..eeeee..hhhhhhhhhh...eeeee................eeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rxx C   6 TKLGVHSEAGKLRKVmVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKmRERGIDVLEmHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKmYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPmYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVmPIGNGVVLIGmGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAmHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGmNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAE-EQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCmTCPIVRDPIDY 418
                                    15     |  25        35        45        55      | 65      | 75        85        95       105       115       125       135       145       155       165       175    |  185       195       205       215       225   |   235    |  245       255       265       275 |     285       295       305       315|      325       335       345     | 355       365       375       385       395       405 |     415   
                                          21-MSE                                   62-MSE    72-MSE                                                                143-MSE                              180-MSE                                          229-MSE    240-MSE                              277-MSE                                316-MSE                            351 |                                                   407-MSE       
                                                                                                                                                                                                                                                                                                                                                                                     353                                                                 


Chain D from PDB  Type:PROTEIN  Length:402
 aligned with ARCA_PSEAE | P13981 from UniProtKB/Swiss-Prot  Length:418

    Alignment length:412
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415  
           ARCA_PSEAE     6 TKLGVHSEAGKLRKVMVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKMRERGIDVLEMHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKMYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPMYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVMPIGNGVVLIGMGERSSRQAIGQVAQSLFAKGAAERVIVAGLPKSRAAMHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGMNIRREEKTFLEVVAESLGLKKLRVVETGGNSFAAEREQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCMTCPIVRDPID 417
               SCOP domains d1rxxd_ D: Arginine deiminase                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1rxxD01 D:6-71,D:157-417                                          -------------------------------------------------------------------------------------1rxxD01 D:6-71,D:157-417 L-arginine/glycine Amidinotransferase; Chain A                                                                                                                                                                                               CATH domains
           Pfam domains (1) ----------------Amidinotransf-1rxxD01 D:22-413                                                                                                                                                                                                                                                                                                                                                                          ---- Pfam domains (1)
           Pfam domains (2) ----------------Amidinotransf-1rxxD02 D:22-413                                                                                                                                                                                                                                                                                                                                                                          ---- Pfam domains (2)
           Pfam domains (3) ----------------Amidinotransf-1rxxD03 D:22-413                                                                                                                                                                                                                                                                                                                                                                          ---- Pfam domains (3)
           Pfam domains (4) ----------------Amidinotransf-1rxxD04 D:22-413                                                                                                                                                                                                                                                                                                                                                                          ---- Pfam domains (4)
         Sec.struct. author ...ee......eeeeee...hhhhhh...............hhhhhhhhhhhhhhhhhh...eeeehhhhhhhhh.hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh.hhhhhhhhhhhhee.hhh..hhhhhhhhhhhhhhh...eee..hhhhhh....eee...eeee....hhhhhhhhhhhhhhhhhhhhhhh...eeee............hhh.eeeee..eeeeee....hhhhhhhhhhhhhhh....eeeeee...--...hhhhheeeee..eeeehhhhhh..eeeeeee.......eeeee...hhhhhhhhh......eeee..--------.........eeee..eeeee..hhhhhhhhhhh..eeeee..........hhhhhheeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rxx D   6 TKLGVHSEAGKLRKVmVCSPGLAHQRLTPSNCDELLFDDVIWVNQAKRDHFDFVTKmRERGIDVLEmHNLLTETIQNPEALKWILDRKITADSVGLGLTSELRSWLESLEPRKLAEYLIGGVAADDLPASEGANILKmYREYLGHSSFLLPPLPNTQFTRDTTCWIYGGVTLNPmYWPARRQETLLTTAIYKFHPEFANAEFEIWYGDPDKDHGSSTLEGGDVmPIGNGVVLIGmGERSSRQAIGQVAQSLFAKGAAERVIVAGLPK--AAmHLDTVFSFCDRDLVTVFPEVVKEIVPFSLRPDPSSPYGmNIRREEKTFLEVVAESLGLKKLRVVETG--------EQWDDGNNVVCLEPGVVVGYDRNTYTNTLLRKAGVEVITISASELGRGRGGGHCmTCPIVRDPID 417
                                    15     |  25        35        45        55      | 65      | 75        85        95       105       115       125       135       145       155       165       175    |  185       195       205       215       225   |   235    |  245       255       265      |275 |     285       295       305       315|      325       335        |-       355       365       375       385       395       405 |     415  
                                          21-MSE                                   62-MSE    72-MSE                                                                143-MSE                              180-MSE                                          229-MSE    240-MSE                         272  | |                                    316-MSE                     344      353                                                   407-MSE      
                                                                                                                                                                                                                                                                                                       275 |                                                                                                                                            
                                                                                                                                                                                                                                                                                                         277-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: GME (20)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (ARCA_PSEAE | P13981)
molecular function
    GO:0016990    arginine deiminase activity    Catalysis of the reaction: L-arginine + H2O = L-citrulline + NH3.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
biological process
    GO:0006527    arginine catabolic process    The chemical reactions and pathways resulting in the breakdown of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0019547    arginine catabolic process to ornithine    The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine.
    GO:0019546    arginine deiminase pathway    The chemical reactions and pathways resulting in the breakdown of arginine into other compounds, including ornithine and CO2, using the enzyme arginine deiminase.
    GO:0006525    arginine metabolic process    The chemical reactions and pathways involving arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0018101    protein citrullination    The hydrolysis of peptidyl-arginine to form peptidyl-citrulline.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  ARCA_PSEAE | P13981
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARCA_PSEAE | P13981: 2a9g 2aaf 2abr 2aci

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1RXX)