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(-) Description

Title :  SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S17E FROM METHANOBACTERIUM THERMOAUTOTROPHICUM, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET TT802 / ONTARIO CENTER FOR STRUCTURAL PROTEOMICS TARGET MTH0803
 
Authors :  B. Wu, A. Yee, Y. J. Huang, T. A. Ramelot, A. Semesi, J. W. Jung, A. Edward, W. Lee, M. A. Kennedy, G. T. Montelione, C. H. Arrowsmith, Northeast Structural Genomics Consortium (Nesg)
Date :  04 Dec 03  (Deposition) - 14 Dec 04  (Release) - 30 Dec 08  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (15x)
Keywords :  Alpha Protein, Structural Genomics, Protein Structure Initiative, Psi, Nesg, Northeast Structural Genomics Consortium, Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Wu, A. Yee, Y. J. Huang, T. A. Ramelot, J. R. Cort, A. Semesi, J. W. Jung, W. Lee, G. T. Montelione, M. A. Kennedy, C. H. Arrowsmith
The Solution Structure Of Ribosomal Protein S17E From Methanobacterium Thermoautotrophicum: A Structural Homolog Of The Ff Domain.
Protein Sci. V. 17 583 2008
PubMed-ID: 18218711  |  Reference-DOI: 10.1110/PS.073272208
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 30S RIBOSOMAL PROTEIN S17E
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET15B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: RPS17E, MTH803
    Organism Scientific: METHANOTHERMOBACTER THERMAUTOTROPHICUS
    Organism Taxid: 145262

 Structural Features

(-) Chains, Units

  
NMR Structure (15x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1RQ6)

(-) Sites  (0, 0)

(no "Site" information available for 1RQ6)

(-) SS Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1RIBOSOMAL_S17EPS00712 Ribosomal protein S17e signature.RS17E_METTH41-56  1A:41-56

(-) Exons   (0, 0)

(no "Exon" information available for 1RQ6)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:62
 aligned with RS17E_METTH | O26894 from UniProtKB/Swiss-Prot  Length:62

    Alignment length:62
                                    10        20        30        40        50        60  
           RS17E_METTH    1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK 62
               SCOP domains d1rq6a_ A: ribosomal protein S17e                              SCOP domains
               CATH domains 1rq6A00 A:1-62 30s ribosomal protein s17e                      CATH domains
               Pfam domains Ribosomal_S17e-1rq6A01 A:1-62                                  Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhh........hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------RIBOSOMAL_S17E  ------ PROSITE
                 Transcript -------------------------------------------------------------- Transcript
                  1rq6 A  1 MGNIRTSFVKRIAKEMIETHPGKFTDDFDTNKKLVEEFSTVSTKHLRNKIAGYITRIISQQK 62
                                    10        20        30        40        50        60
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Ribosomal_S17e] (1)

(-) Gene Ontology  (5, 5)

NMR Structure(hide GO term definitions)
Chain A   (RS17E_METTH | O26894)
molecular function
    GO:0003735    structural constituent of ribosome    The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005840    ribosome    An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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(-) Related Entries Specified in the PDB File

6028 RELATED ID: TT802 RELATED DB: TARGETDB