Chain A from PDB Type:PROTEIN Length:185
aligned with Q95VR4_TRIVA | Q95VR4 from UniProtKB/TrEMBL Length:341
Alignment length:199
341
156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 |
Q95VR4_TRIVA 147 SMCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPIETYLTAYPTFAPM---- -
SCOP domains d1q87a_ A: 39 kda initiator binding protein, IBP39, C-terminal domains SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhh....hhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........---------...eeeee..eeeeeeeee..eeeeeee..........ee.....ee.hhhhhhhhh..-----......hhhhh. Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1q87 A 147 SMCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQ---------DSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPI-----AYPTFAPMHHHH 345
156 166 176 186 196 206 216 226 236 246 256 | - | 276 286 296 306 316 326 | 336
260 270 328 334
Chain B from PDB Type:PROTEIN Length:193
aligned with Q95VR4_TRIVA | Q95VR4 from UniProtKB/TrEMBL Length:341
Alignment length:198
341
156 166 176 186 196 206 216 226 236 246 256 266 276 286 296 306 316 326 336 |
Q95VR4_TRIVA 147 SMCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNANNQRDSISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPIETYLTAYPTFAPM--- -
SCOP domains d1q87b_ B: 39 kda initiator binding protein, IBP39, C-terminal domains SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains (1) IBP39-1q87B01 B:147-326 ------------------ Pfam domains (1)
Pfam domains (2) IBP39-1q87B02 B:147-326 ------------------ Pfam domains (2)
Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhh....eeehhhhhhhhhhhhh....hhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............-----..eeee......eeeeee..eeeeeee..........ee.....ee.hhhhhhhhh.............hhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
1q87 B 147 SMCIGNSTPNEQETFRAKVDEIWFRLTQKTDGTVMRDFLIEKAAEYFKQPEQPKQNAIEVISAIMAPQEEQTKSKADLYKFLAMFGPYETIMLKIASLLLISNNKGHWLTFDPQAEKNA-----SISGWFDQNEPNCLILKTPTGIRKIWNKPLIEATGQYLMDENGEKYDSWDKYFEMKPIETYLTAYPTFAPMHHH 344
156 166 176 186 196 206 216 226 236 246 256 |- | 276 286 296 306 316 326 336
265 271
Legend: |
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→ Mismatch |
(orange background) |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |