1Q1G - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PNP WITH 5'-METHYLTHIO-IMMUCILLIN-H

Authors :   W. Shi, L. M. Ting, G. A. Kicska, A. Lewandowicz, P. C. Tyler, G. B. Evans, R. H. Furneaux, K. Kim, S. C. Almo, V. L. Schramm

Date :   19 Jul 03 (Deposition) - 16 Mar 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.02

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Transition State Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   W. Shi, L. M. Ting, G. A. Kicska, A. Lewandowicz, P. C. Tyler, G. B. Evans R. H. Furneaux, K. Kim, S. C. Almo, V. L. Schramm
Plasmodium Falciparum Purine Nucleoside Phosphorylase: Crystal Structures, Immucillin Inhibitors, And Dual Catalytic Function.
J. Biol. Chem. V. 279 18103 2004
PubMed-ID: 14982926 | Reference-DOI: 10.1074/JBC.C400068200

Molecule 1 - URIDINE PHOSPHORYLASE PUTATIVE
	Chains	:	A, B, C, D, E, F
	EC Number	:	2.4.2.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRCHIS2-TOPO
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	PLASMODIUM FALCIPARUM
	Organism Taxid	:	36329
	Strain	:	3D7

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 37)

No.	Name	Count	Type	Full Name
1	IPA	9	Ligand/Ion	ISOPROPYL ALCOHOL
2	MTI	6	Ligand/Ion	3,4-DIHYDROXY-2-[(METHYLSULFANYL)METHYL]-5-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)PYRROLIDINIUM
3	SO4	22	Ligand/Ion	SULFATE ION

Asymmetric Unit (37, 37)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLY A:23 , ARG A:88 , GLY A:90 , SER A:91 , MTI A:301 , ARG B:45	BINDING SITE FOR RESIDUE SO4 A 401
02	AC2	SOFTWARE	ARG A:45 , GLY B:23 , ARG B:88 , GLY B:90 , SER B:91 , MTI B:302 , HOH B:780	BINDING SITE FOR RESIDUE SO4 B 402
03	AC3	SOFTWARE	GLY C:23 , ARG C:88 , GLY C:90 , SER C:91 , MTI C:303 , HOH C:888 , ARG D:45	BINDING SITE FOR RESIDUE SO4 C 403
04	AC4	SOFTWARE	ARG C:45 , GLY D:23 , ARG D:88 , GLY D:90 , SER D:91 , MTI D:304 , HOH D:768	BINDING SITE FOR RESIDUE SO4 D 404
05	AC5	SOFTWARE	GLY E:23 , ARG E:88 , GLY E:90 , SER E:91 , MTI E:305 , HOH E:710 , ARG F:45	BINDING SITE FOR RESIDUE SO4 E 405
06	AC6	SOFTWARE	ARG E:45 , GLY F:23 , ARG F:88 , GLY F:90 , SER F:91 , MTI F:306 , HOH F:893	BINDING SITE FOR RESIDUE SO4 F 406
07	AC7	SOFTWARE	HIS B:123 , GLY B:124 , ASP B:125 , IPA B:502 , HOH B:681 , HOH B:736 , ARG C:169	BINDING SITE FOR RESIDUE SO4 B 407
08	AC8	SOFTWARE	HIS D:123 , GLY D:124 , ASP D:125 , IPA D:507 , HOH D:841 , HOH D:935 , ARG E:169	BINDING SITE FOR RESIDUE SO4 D 408
09	AC9	SOFTWARE	ARG A:169 , HIS F:123 , GLY F:124 , ASP F:125 , IPA F:505 , HOH F:836	BINDING SITE FOR RESIDUE SO4 F 409
10	BC1	SOFTWARE	LYS B:101 , ARG B:102	BINDING SITE FOR RESIDUE SO4 B 410
11	BC2	SOFTWARE	LYS F:101 , ARG F:102 , HOH F:811 , HOH F:868	BINDING SITE FOR RESIDUE SO4 F 411
12	BC3	SOFTWARE	HIS A:224 , LYS D:101 , ARG D:102 , LYS D:211	BINDING SITE FOR RESIDUE SO4 D 412
13	BC4	SOFTWARE	LYS A:101 , ARG A:102 , ASP A:216 , HOH A:851 , GLU D:227	BINDING SITE FOR RESIDUE SO4 A 413
14	BC5	SOFTWARE	HIS A:123 , GLY A:124 , ASP A:125 , IPA A:503 , HOH A:834 , ARG F:169	BINDING SITE FOR RESIDUE SO4 A 414
15	BC6	SOFTWARE	ARG D:169 , HIS E:123 , GLY E:124 , ASP E:125 , IPA E:506 , HOH E:833	BINDING SITE FOR RESIDUE SO4 E 415
16	BC7	SOFTWARE	ARG B:169 , IPA B:508 , HIS C:123 , GLY C:124 , ASP C:125 , HOH C:839 , HOH C:848	BINDING SITE FOR RESIDUE SO4 C 416
17	BC8	SOFTWARE	HIS B:7 , LYS B:9 , ASN B:44 , ARG B:45	BINDING SITE FOR RESIDUE SO4 B 417
18	BC9	SOFTWARE	HIS A:7 , LYS A:9 , ASN A:44 , ARG A:45 , ASN B:219	BINDING SITE FOR RESIDUE SO4 A 418
19	CC1	SOFTWARE	HIS F:7 , LYS F:9 , ASN F:44 , ARG F:45	BINDING SITE FOR RESIDUE SO4 F 419
20	CC2	SOFTWARE	HIS E:7 , LYS E:9 , ASN E:44 , ARG E:45	BINDING SITE FOR RESIDUE SO4 E 420
21	CC3	SOFTWARE	HOH C:809 , HIS D:7 , LYS D:9 , ASN D:44 , ARG D:45	BINDING SITE FOR RESIDUE SO4 D 421
22	CC4	SOFTWARE	HIS C:7 , LYS C:9 , ASN C:44 , ARG C:45 , ASN D:219	BINDING SITE FOR RESIDUE SO4 C 422
23	CC5	SOFTWARE	VAL A:66 , ARG A:88 , SER A:91 , CYS A:92 , GLY A:93 , TYR A:160 , GLU A:182 , MET A:183 , GLU A:184 , ASP A:206 , TRP A:212 , SO4 A:401 , HOH A:690 , HOH A:835 , HOH A:934 , HIS B:7 , VAL B:73	BINDING SITE FOR RESIDUE MTI A 301
24	CC6	SOFTWARE	HIS A:7 , VAL A:73 , VAL B:66 , ARG B:88 , SER B:91 , CYS B:92 , GLY B:93 , TYR B:160 , GLU B:182 , MET B:183 , GLU B:184 , ASP B:206 , TRP B:212 , SO4 B:402 , HOH B:677 , HOH B:852 , HOH B:854	BINDING SITE FOR RESIDUE MTI B 302
25	CC7	SOFTWARE	ARG C:88 , SER C:91 , CYS C:92 , GLY C:93 , TYR C:160 , GLU C:182 , MET C:183 , GLU C:184 , ASP C:206 , TRP C:212 , SO4 C:403 , HOH C:650 , HOH C:898 , HOH C:910 , HIS D:7 , VAL D:73	BINDING SITE FOR RESIDUE MTI C 303
26	CC8	SOFTWARE	HIS C:7 , VAL C:73 , ARG D:88 , SER D:91 , CYS D:92 , GLY D:93 , TYR D:160 , GLU D:182 , MET D:183 , GLU D:184 , ASP D:206 , TRP D:212 , SO4 D:404 , HOH D:617 , HOH D:829 , HOH D:855	BINDING SITE FOR RESIDUE MTI D 304
27	CC9	SOFTWARE	VAL E:66 , ARG E:88 , SER E:91 , CYS E:92 , GLY E:93 , TYR E:160 , GLU E:182 , MET E:183 , GLU E:184 , ASP E:206 , TRP E:212 , SO4 E:405 , HOH E:646 , HOH E:923 , HOH E:927 , HIS F:7 , VAL F:73	BINDING SITE FOR RESIDUE MTI E 305
28	DC1	SOFTWARE	VAL E:73 , ARG F:88 , SER F:91 , CYS F:92 , GLY F:93 , TYR F:160 , GLU F:182 , MET F:183 , GLU F:184 , ASP F:206 , PRO F:209 , TRP F:212 , SO4 F:406 , HOH F:742 , HOH F:798 , HOH F:832	BINDING SITE FOR RESIDUE MTI F 306
29	DC2	SOFTWARE	ARG A:169 , ARG B:116 , LEU B:120 , HOH B:865	BINDING SITE FOR RESIDUE IPA B 501
30	DC3	SOFTWARE	HIS B:119 , HIS B:123 , SO4 B:407 , ARG C:169	BINDING SITE FOR RESIDUE IPA B 502
31	DC4	SOFTWARE	HIS A:119 , HIS A:123 , SO4 A:414 , ARG F:169	BINDING SITE FOR RESIDUE IPA A 503
32	DC5	SOFTWARE	ARG E:169 , ARG F:116 , LEU F:120 , HOH F:846	BINDING SITE FOR RESIDUE IPA F 504
33	DC6	SOFTWARE	ARG A:169 , HIS F:119 , HIS F:123 , SO4 F:409	BINDING SITE FOR RESIDUE IPA F 505
34	DC7	SOFTWARE	ARG D:169 , HIS E:119 , HIS E:123 , SO4 E:415	BINDING SITE FOR RESIDUE IPA E 506
35	DC8	SOFTWARE	HIS D:119 , HIS D:123 , SO4 D:408 , ARG E:169	BINDING SITE FOR RESIDUE IPA D 507
36	DC9	SOFTWARE	ARG B:169 , HIS C:119 , HIS C:123 , SO4 C:416	BINDING SITE FOR RESIDUE IPA B 508
37	EC1	SOFTWARE	ARG C:169 , ARG D:116 , LEU D:120 , HOH D:908	BINDING SITE FOR RESIDUE IPA D 509

(no "SS Bond" information available for 1Q1G)

(no "Cis Peptide Bond" information available for 1Q1G)

(no "SAP(SNP)/Variant" information available for 1Q1G)

(no "PROSITE Motif" information available for 1Q1G)

(no "Exon" information available for 1Q1G)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1ga_ A: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gA00 A:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...............eeeee.hhhhhhhhhh...eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhhh.eeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g A   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain B from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1gb_ B: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gB00 B:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeee.hhhhhhhhhhhh.eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhh..eeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g B   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain C from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1gc_ C: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gC00 C:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeee.hhhhhhhhhh...eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhh..eeeeeeee.....hhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g C   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain D from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1gd_ D: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gD00 D:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeee.hhhhhhhhhh...eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhh..eeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g D   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain E from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1ge_ E: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gE00 E:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeee.hhhhhhhhhh...eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhhh.eeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g E   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Chain F from PDB  Type:PROTEIN  Length:243
 aligned with Q8I3X4_PLAF7 | Q8I3X4 from UniProtKB/TrEMBL  Length:245

    Alignment length:243
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242   
         Q8I3X4_PLAF7     3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
               SCOP domains d1q1gf_ F: Putative uridine phosphorylase                                                                                                                                                                                                           SCOP domains
               CATH domains 1q1gF00 F:3-245  [code=3.40.50.1580, no name defined]                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhh..eeeee.hhhhhhhhhh...eeeeeeee..eeeeeeee..eeeeeee...hhhhhhhhhhhhhh....eeeeeeeeee..........eeeeeeeeee.hhhhhhh.....ee.hhhhhhhhhhhhhhh....eeeeeeee...........hhhhhhhh...eee.hhhhhhhhhhhhh.eeeeeeee..hhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1q1g F   3 NLLRHLKISKEQITPVVLVVGDPGRVDKIKVVCDSYVDLAYNREYKSVECHYKGQKFLCVSHGVGSAGCAVCFEELCQNGAKVIIRAGSCGSLQPDLIKRGDICICNAAVREDRVSHLLIHGDFPAVGDFDVYDTLNKCAQELNVPVFNGISVSSDMYYPNKIIPSRLEDYSKANAAVVEMELATLMVIGTLRKVKTGGILIVDGCPFKWDEGDFDNNLVPHQLENMIKIALGACAKLATKYA 245
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Phosphorylase/hydrolase-like (558)

Superfamily: Purine and uridine phosphorylases (283)

Family: Purine and uridine phosphorylases (224)

Protein domain: Putative uridine phosphorylase (3)

Malaria parasite (Plasmodium falciparum) [TaxId: 5833] (3)

1a	d1q1ga_	A:
1b	d1q1gb_	B:
1c	d1q1gc_	C:
1d	d1q1gd_	D:
1e	d1q1ge_	E:
1f	d1q1gf_	F:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1580, no name defined] (194)

Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7. (2)

1a	1q1gA00	A:3-245
1b	1q1gB00	B:3-245
1c	1q1gC00	C:3-245
1d	1q1gD00	D:3-245
1e	1q1gE00	E:3-245
1f	1q1gF00	F:3-245

(no "Pfam Domain" information available for 1Q1G)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (Q8I3X4_PLAF7 | Q8I3X4)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
	GO:0004850	uridine phosphorylase activity	Catalysis of the reaction: uridine + phosphate = uracil + alpha-D-ribose 1-phosphate.
biological process
	GO:0009116	nucleoside metabolic process	The chemical reactions and pathways involving a nucleoside, a nucleobase linked to either beta-D-ribofuranose (a ribonucleoside) or 2-deoxy-beta-D-ribofuranose, (a deoxyribonucleoside), e.g. adenosine, guanosine, inosine, cytidine, uridine and deoxyadenosine, deoxyguanosine, deoxycytidine and thymidine (= deoxythymidine).

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1q1g)

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	1q1g
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	Q8I3X4_PLAF7 \| Q8I3X4
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	2.4.2.1
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	Q8I3X4_PLAF7 \| Q8I3X4
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UniProtKB/TrEMBL
	Q8I3X4_PLAF7 \| Q8I3X4	:	1nw4 1sq6 2bsx 3enz 3fow 3phc

1nw4	THE SAME PROTEIN COMPLEXED WITH IMMUCILLIN-H

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 37)

Sites (37, 37)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 6)

CATH Domains (1, 6)

Pfam Domains (0, 0)

Gene Ontology (5, 5)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File