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1Q1G
Asym. Unit
Info
Asym.Unit (248 KB)
Biol.Unit 1 (240 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM PNP WITH 5'-METHYLTHIO-IMMUCILLIN-H
Authors
:
W. Shi, L. M. Ting, G. A. Kicska, A. Lewandowicz, P. C. Tyler, G. B. Evans, R. H. Furneaux, K. Kim, S. C. Almo, V. L. Schramm
Date
:
19 Jul 03 (Deposition) - 16 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.02
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Transition State Complex, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. Shi, L. M. Ting, G. A. Kicska, A. Lewandowicz, P. C. Tyler, G. B. Evans R. H. Furneaux, K. Kim, S. C. Almo, V. L. Schramm
Plasmodium Falciparum Purine Nucleoside Phosphorylase: Crystal Structures, Immucillin Inhibitors, And Dual Catalytic Function.
J. Biol. Chem. V. 279 18103 2004
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Hetero Components
(3, 37)
Info
All Hetero Components
1a: ISOPROPYL ALCOHOL (IPAa)
1b: ISOPROPYL ALCOHOL (IPAb)
1c: ISOPROPYL ALCOHOL (IPAc)
1d: ISOPROPYL ALCOHOL (IPAd)
1e: ISOPROPYL ALCOHOL (IPAe)
1f: ISOPROPYL ALCOHOL (IPAf)
1g: ISOPROPYL ALCOHOL (IPAg)
1h: ISOPROPYL ALCOHOL (IPAh)
1i: ISOPROPYL ALCOHOL (IPAi)
2a: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTIa)
2b: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTIb)
2c: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTIc)
2d: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTId)
2e: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTIe)
2f: 3,4-DIHYDROXY-2-[(METHYLSULFANYL)M... (MTIf)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
3c: SULFATE ION (SO4c)
3d: SULFATE ION (SO4d)
3e: SULFATE ION (SO4e)
3f: SULFATE ION (SO4f)
3g: SULFATE ION (SO4g)
3h: SULFATE ION (SO4h)
3i: SULFATE ION (SO4i)
3j: SULFATE ION (SO4j)
3k: SULFATE ION (SO4k)
3l: SULFATE ION (SO4l)
3m: SULFATE ION (SO4m)
3n: SULFATE ION (SO4n)
3o: SULFATE ION (SO4o)
3p: SULFATE ION (SO4p)
3q: SULFATE ION (SO4q)
3r: SULFATE ION (SO4r)
3s: SULFATE ION (SO4s)
3t: SULFATE ION (SO4t)
3u: SULFATE ION (SO4u)
3v: SULFATE ION (SO4v)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IPA
9
Ligand/Ion
ISOPROPYL ALCOHOL
2
MTI
6
Ligand/Ion
3,4-DIHYDROXY-2-[(METHYLSULFANYL)METHYL]-5-(4-OXO-4,5-DIHYDRO-3H-PYRROLO[3,2-D]PYRIMIDIN-7-YL)PYRROLIDINIUM
3
SO4
22
Ligand/Ion
SULFATE ION
[
close Hetero Component info
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Sites
(37, 37)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLY A:23 , ARG A:88 , GLY A:90 , SER A:91 , MTI A:301 , ARG B:45
BINDING SITE FOR RESIDUE SO4 A 401
02
AC2
SOFTWARE
ARG A:45 , GLY B:23 , ARG B:88 , GLY B:90 , SER B:91 , MTI B:302 , HOH B:780
BINDING SITE FOR RESIDUE SO4 B 402
03
AC3
SOFTWARE
GLY C:23 , ARG C:88 , GLY C:90 , SER C:91 , MTI C:303 , HOH C:888 , ARG D:45
BINDING SITE FOR RESIDUE SO4 C 403
04
AC4
SOFTWARE
ARG C:45 , GLY D:23 , ARG D:88 , GLY D:90 , SER D:91 , MTI D:304 , HOH D:768
BINDING SITE FOR RESIDUE SO4 D 404
05
AC5
SOFTWARE
GLY E:23 , ARG E:88 , GLY E:90 , SER E:91 , MTI E:305 , HOH E:710 , ARG F:45
BINDING SITE FOR RESIDUE SO4 E 405
06
AC6
SOFTWARE
ARG E:45 , GLY F:23 , ARG F:88 , GLY F:90 , SER F:91 , MTI F:306 , HOH F:893
BINDING SITE FOR RESIDUE SO4 F 406
07
AC7
SOFTWARE
HIS B:123 , GLY B:124 , ASP B:125 , IPA B:502 , HOH B:681 , HOH B:736 , ARG C:169
BINDING SITE FOR RESIDUE SO4 B 407
08
AC8
SOFTWARE
HIS D:123 , GLY D:124 , ASP D:125 , IPA D:507 , HOH D:841 , HOH D:935 , ARG E:169
BINDING SITE FOR RESIDUE SO4 D 408
09
AC9
SOFTWARE
ARG A:169 , HIS F:123 , GLY F:124 , ASP F:125 , IPA F:505 , HOH F:836
BINDING SITE FOR RESIDUE SO4 F 409
10
BC1
SOFTWARE
LYS B:101 , ARG B:102
BINDING SITE FOR RESIDUE SO4 B 410
11
BC2
SOFTWARE
LYS F:101 , ARG F:102 , HOH F:811 , HOH F:868
BINDING SITE FOR RESIDUE SO4 F 411
12
BC3
SOFTWARE
HIS A:224 , LYS D:101 , ARG D:102 , LYS D:211
BINDING SITE FOR RESIDUE SO4 D 412
13
BC4
SOFTWARE
LYS A:101 , ARG A:102 , ASP A:216 , HOH A:851 , GLU D:227
BINDING SITE FOR RESIDUE SO4 A 413
14
BC5
SOFTWARE
HIS A:123 , GLY A:124 , ASP A:125 , IPA A:503 , HOH A:834 , ARG F:169
BINDING SITE FOR RESIDUE SO4 A 414
15
BC6
SOFTWARE
ARG D:169 , HIS E:123 , GLY E:124 , ASP E:125 , IPA E:506 , HOH E:833
BINDING SITE FOR RESIDUE SO4 E 415
16
BC7
SOFTWARE
ARG B:169 , IPA B:508 , HIS C:123 , GLY C:124 , ASP C:125 , HOH C:839 , HOH C:848
BINDING SITE FOR RESIDUE SO4 C 416
17
BC8
SOFTWARE
HIS B:7 , LYS B:9 , ASN B:44 , ARG B:45
BINDING SITE FOR RESIDUE SO4 B 417
18
BC9
SOFTWARE
HIS A:7 , LYS A:9 , ASN A:44 , ARG A:45 , ASN B:219
BINDING SITE FOR RESIDUE SO4 A 418
19
CC1
SOFTWARE
HIS F:7 , LYS F:9 , ASN F:44 , ARG F:45
BINDING SITE FOR RESIDUE SO4 F 419
20
CC2
SOFTWARE
HIS E:7 , LYS E:9 , ASN E:44 , ARG E:45
BINDING SITE FOR RESIDUE SO4 E 420
21
CC3
SOFTWARE
HOH C:809 , HIS D:7 , LYS D:9 , ASN D:44 , ARG D:45
BINDING SITE FOR RESIDUE SO4 D 421
22
CC4
SOFTWARE
HIS C:7 , LYS C:9 , ASN C:44 , ARG C:45 , ASN D:219
BINDING SITE FOR RESIDUE SO4 C 422
23
CC5
SOFTWARE
VAL A:66 , ARG A:88 , SER A:91 , CYS A:92 , GLY A:93 , TYR A:160 , GLU A:182 , MET A:183 , GLU A:184 , ASP A:206 , TRP A:212 , SO4 A:401 , HOH A:690 , HOH A:835 , HOH A:934 , HIS B:7 , VAL B:73
BINDING SITE FOR RESIDUE MTI A 301
24
CC6
SOFTWARE
HIS A:7 , VAL A:73 , VAL B:66 , ARG B:88 , SER B:91 , CYS B:92 , GLY B:93 , TYR B:160 , GLU B:182 , MET B:183 , GLU B:184 , ASP B:206 , TRP B:212 , SO4 B:402 , HOH B:677 , HOH B:852 , HOH B:854
BINDING SITE FOR RESIDUE MTI B 302
25
CC7
SOFTWARE
ARG C:88 , SER C:91 , CYS C:92 , GLY C:93 , TYR C:160 , GLU C:182 , MET C:183 , GLU C:184 , ASP C:206 , TRP C:212 , SO4 C:403 , HOH C:650 , HOH C:898 , HOH C:910 , HIS D:7 , VAL D:73
BINDING SITE FOR RESIDUE MTI C 303
26
CC8
SOFTWARE
HIS C:7 , VAL C:73 , ARG D:88 , SER D:91 , CYS D:92 , GLY D:93 , TYR D:160 , GLU D:182 , MET D:183 , GLU D:184 , ASP D:206 , TRP D:212 , SO4 D:404 , HOH D:617 , HOH D:829 , HOH D:855
BINDING SITE FOR RESIDUE MTI D 304
27
CC9
SOFTWARE
VAL E:66 , ARG E:88 , SER E:91 , CYS E:92 , GLY E:93 , TYR E:160 , GLU E:182 , MET E:183 , GLU E:184 , ASP E:206 , TRP E:212 , SO4 E:405 , HOH E:646 , HOH E:923 , HOH E:927 , HIS F:7 , VAL F:73
BINDING SITE FOR RESIDUE MTI E 305
28
DC1
SOFTWARE
VAL E:73 , ARG F:88 , SER F:91 , CYS F:92 , GLY F:93 , TYR F:160 , GLU F:182 , MET F:183 , GLU F:184 , ASP F:206 , PRO F:209 , TRP F:212 , SO4 F:406 , HOH F:742 , HOH F:798 , HOH F:832
BINDING SITE FOR RESIDUE MTI F 306
29
DC2
SOFTWARE
ARG A:169 , ARG B:116 , LEU B:120 , HOH B:865
BINDING SITE FOR RESIDUE IPA B 501
30
DC3
SOFTWARE
HIS B:119 , HIS B:123 , SO4 B:407 , ARG C:169
BINDING SITE FOR RESIDUE IPA B 502
31
DC4
SOFTWARE
HIS A:119 , HIS A:123 , SO4 A:414 , ARG F:169
BINDING SITE FOR RESIDUE IPA A 503
32
DC5
SOFTWARE
ARG E:169 , ARG F:116 , LEU F:120 , HOH F:846
BINDING SITE FOR RESIDUE IPA F 504
33
DC6
SOFTWARE
ARG A:169 , HIS F:119 , HIS F:123 , SO4 F:409
BINDING SITE FOR RESIDUE IPA F 505
34
DC7
SOFTWARE
ARG D:169 , HIS E:119 , HIS E:123 , SO4 E:415
BINDING SITE FOR RESIDUE IPA E 506
35
DC8
SOFTWARE
HIS D:119 , HIS D:123 , SO4 D:408 , ARG E:169
BINDING SITE FOR RESIDUE IPA D 507
36
DC9
SOFTWARE
ARG B:169 , HIS C:119 , HIS C:123 , SO4 C:416
BINDING SITE FOR RESIDUE IPA B 508
37
EC1
SOFTWARE
ARG C:169 , ARG D:116 , LEU D:120 , HOH D:908
BINDING SITE FOR RESIDUE IPA D 509
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
[
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Exons
(0, 0)
Info
All Exons
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Label:
All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1q1ga_ (A:)
1b: SCOP_d1q1gb_ (B:)
1c: SCOP_d1q1gc_ (C:)
1d: SCOP_d1q1gd_ (D:)
1e: SCOP_d1q1ge_ (E:)
1f: SCOP_d1q1gf_ (F:)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Phosphorylase/hydrolase-like
(558)
Superfamily
:
Purine and uridine phosphorylases
(283)
Family
:
Purine and uridine phosphorylases
(224)
Protein domain
:
Putative uridine phosphorylase
(3)
Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
(3)
1a
d1q1ga_
A:
1b
d1q1gb_
B:
1c
d1q1gc_
C:
1d
d1q1gd_
D:
1e
d1q1ge_
E:
1f
d1q1gf_
F:
[
close SCOP info
]
CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1q1gA00 (A:3-245)
1b: CATH_1q1gB00 (B:3-245)
1c: CATH_1q1gC00 (C:3-245)
1d: CATH_1q1gD00 (D:3-245)
1e: CATH_1q1gE00 (E:3-245)
1f: CATH_1q1gF00 (F:3-245)
View:
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Topologies
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(
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Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.1580, no name defined]
(194)
Plasmodium falciparum 3d7. Organism_taxid: 36329. Strain: 3d7.
(2)
1a
1q1gA00
A:3-245
1b
1q1gB00
B:3-245
1c
1q1gC00
C:3-245
1d
1q1gD00
D:3-245
1e
1q1gE00
E:3-245
1f
1q1gF00
F:3-245
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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Asym.Unit (248 KB)
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Biol.Unit 1 (240 KB)
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