1PWZ - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH (R)-STYRENE OXIDE AND CHLORIDE

Authors :   R. M. De Jong, J. J. W. Tiesinga, H. J. Rozeboom, K. H. Kalk, L. Tang, D. B. B. W. Dijkstra

Date :   02 Jul 03 (Deposition) - 07 Oct 03 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Haloalcohol Dehalogenase, Halohydrin Dehalogenase, Halohydrin Hydrogen-Halide Lyase, Sdr Family, Short-Chain Dehydrogenase/Reductase, Rossmann Fold, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. M. De Jong, J. J. W. Tiesinga, H. J. Rozeboom, K. H. Kalk, L. Tang, D. B. Janssen, B. W. Dijkstra
Structure And Mechanism Of A Bacterial Haloalcohol Dehalogenase: A New Variation Of The Short-Chain Dehydrogenase/Reductase Fold Without An Nad(P)H Binding Sit
Embo J. V. 22 4933 2003
PubMed-ID: 14517233 | Reference-DOI: 10.1093/EMBOJ/CDG479

Molecule 1 - HALOHYDRIN DEHALOGENASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PGEF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS
	Organism Taxid	:	358

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 4)

No.	Name	Count	Type	Full Name
1	CL	2	Ligand/Ion	CHLORIDE ION
2	RSO	2	Ligand/Ion	R-STYRENE OXIDE

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	RSO	4	Ligand/Ion	R-STYRENE OXIDE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:12 , ASN A:176 , TYR A:177 , LEU A:178 , RSO A:256	BINDING SITE FOR RESIDUE CL A 255
2	AC2	SOFTWARE	PHE B:12 , ASN B:176 , TYR B:177 , LEU B:178 , TYR B:187 , RSO B:256 , HOH B:284	BINDING SITE FOR RESIDUE CL B 255
3	AC3	SOFTWARE	SER A:132 , TRP A:139 , TYR A:145 , PHE A:186 , TYR A:187 , TRP A:249 , CL A:255	BINDING SITE FOR RESIDUE RSO A 256
4	AC4	SOFTWARE	SER B:132 , TRP B:139 , TYR B:145 , ASN B:176 , PHE B:186 , TRP B:249 , CL B:255	BINDING SITE FOR RESIDUE RSO B 256

(no "SS Bond" information available for 1PWZ)

Asymmetric Unit

No.	Residues
1	Tyr A:185	-	Phe A:186
2	Glu A:190	-	Pro A:191
3	Phe A:243	-	Pro A:244
4	Tyr B:185	-	Phe B:186
5	Glu B:190	-	Pro B:191
6	Phe B:243	-	Pro B:244

(no "SAP(SNP)/Variant" information available for 1PWZ)

(no "PROSITE Motif" information available for 1PWZ)

(no "Exon" information available for 1PWZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwza_ A: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwzA00 A:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......hhhhhhhhhh....eeee.........hhhhhh.....eee...........hhhhhh....eeeee........hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee...eee.....eehhhhh.hhhhhhhhhhhh.........hhhhhhhhhhh..hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwz A   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwzb_ B: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwzB00 B:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
           Pfam domains (1) --------adh_short_C2-1pwzB01 B:10-244                                                                                                                                                                                                              --------- Pfam domains (1)
           Pfam domains (2) --------adh_short_C2-1pwzB02 B:10-244                                                                                                                                                                                                              --------- Pfam domains (2)
         Sec.struct. author .eeee......hhhhhhhhhh....eeee.........hhhhhh.....eee...........hhhhhhh...eeeee........hhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhh.hhhhhhhhhhhh.........hhhhhhhhhh...hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwz B   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Halohydrin dehalogenase HheC (5)

Agrobacterium tumefaciens [TaxId: 358] (5)

1a	d1pwza_	A:
1b	d1pwzb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Agrobacterium tumefaciens. Organism_taxid: 358. (3)

1a	1pwzA00	A:2-253
1b	1pwzB00	B:2-253

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: adh_short_C2 (98)

Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) (2)

1a	adh_short_C2-1pwzB01	B:10-244
1b	adh_short_C2-1pwzB02	B:10-244

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1PWZ)

Asymmetric Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		RSO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Glu A:190 - Pro A:191	[ RasMol ]
		Glu B:190 - Pro B:191	[ RasMol ]
		Phe A:243 - Pro A:244	[ RasMol ]
		Phe B:243 - Pro B:244	[ RasMol ]
		Tyr A:185 - Phe A:186	[ RasMol ]
		Tyr B:185 - Phe B:186	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym. Unit PNG format \| Asym. Unit - sites PNG format \| Biol. Unit 1 PNG format \| Biol. Unit 1 - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	1pwz
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	Q93D82_RHIRD \| Q93D82
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/TrEMBL

Access by Enzyme Classificator (EC Number)
	(no 'Enzyme Classificator' available)
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	Q93D82_RHIRD \| Q93D82
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/TrEMBL
	Q93D82_RHIRD \| Q93D82	:	1pwx 1px0 1zmt 1zo8 3zn2 4ixt 4ixw 4iy1 5kvc 5kwe

1pwx	CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH BROMIDE
1px0	CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH THE HALOALCOHOL MIMIC (R)-1-PARA-NITRO- PHENYL-2-AZIDO-ETHANOL

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (0, 0)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File