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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF THE HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH BROMIDE

Authors :   R. M. De Jong, J. J. W. Tiesinga, H. J. Rozeboom, K. H. Kalk, L. Tang, D. B. B. W. Dijkstra

Date :   02 Jul 03 (Deposition) - 07 Oct 03 (Release) - 16 Feb 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Haloalcohol Dehalogenase, Halohydrin Dehalogenase, Halohydrin Hydrogen-Halide Lyase, Sdr Family, Short-Chain Dehydrogenase/Reductase, Rossmann Fold, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. M. De Jong, J. J. W. Tiesinga, H. J. Rozeboom, K. H. Kalk, L. Tang, D. B. Janssen, B. W. Dijkstra
Structure And Mechanism Of A Bacterial Haloalcohol Dehalogenase: A New Variation Of The Short-Chain Dehydrogenase/Reductase Fold Without An Nad(P)H Binding Sit
Embo J. V. 22 4933 2003
PubMed-ID: 14517233 | Reference-DOI: 10.1093/EMBOJ/CDG479

Molecule 1 - HALOHYDRIN DEHALOGENASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PGEF
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	AGROBACTERIUM TUMEFACIENS
	Organism Taxid	:	358

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (1, 8)

No.	Name	Count	Type	Full Name
1	BR	8	Ligand/Ion	BROMIDE ION

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:12 , PRO A:175 , ASN A:176 , LEU A:178 , TYR A:187	BINDING SITE FOR RESIDUE BR A 601
2	AC2	SOFTWARE	ASN C:176 , TYR C:187	BINDING SITE FOR RESIDUE BR C 602
3	AC3	SOFTWARE	PHE D:12 , TYR D:187	BINDING SITE FOR RESIDUE BR D 603
4	AC4	SOFTWARE	PRO B:175 , ASN B:176 , TYR B:177 , LEU B:178 , TYR B:187	BINDING SITE FOR RESIDUE BR B 604
5	AC5	SOFTWARE	SER B:2	BINDING SITE FOR RESIDUE BR B 605
6	AC6	SOFTWARE	ALA A:158 , GLU A:162 , GLU B:141 , SER B:143 , HOH B:636	BINDING SITE FOR RESIDUE BR A 606
7	AC7	SOFTWARE	HIS C:11 , PHE C:12 , MET C:15 , HOH C:716	BINDING SITE FOR RESIDUE BR C 607
8	AC8	SOFTWARE	MET B:245 , ILE B:246 , LYS C:161 , PRO D:138	BINDING SITE FOR RESIDUE BR B 608

(no "SS Bond" information available for 1PWX)

Asymmetric/Biological Unit

No.	Residues
1	Tyr A:185	-	Phe A:186
2	Glu A:190	-	Pro A:191
3	Phe A:243	-	Pro A:244
4	Tyr B:185	-	Phe B:186
5	Glu B:190	-	Pro B:191
6	Phe B:243	-	Pro B:244
7	Tyr C:185	-	Phe C:186
8	Glu C:190	-	Pro C:191
9	Phe C:243	-	Pro C:244
10	Tyr D:185	-	Phe D:186
11	Glu D:190	-	Pro D:191
12	Phe D:243	-	Pro D:244

(no "SAP(SNP)/Variant" information available for 1PWX)

(no "PROSITE Motif" information available for 1PWX)

(no "Exon" information available for 1PWX)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwxa_ A: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwxA00 A:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.....hhhhhhhhhhhh..eeeeehhhhhh.hhhhhhhhhh..eee....hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee............hhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwx A   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain B from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwxb_ B: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwxB00 B:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee......hhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhh....hhhhhhhhhhhhhhhhhhhhhhh.....eeeeee...eee.....ee......hhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwx B   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain C from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwxc_ C: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwxC00 C:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee......hhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhh...ee....hhhhhhhhhhhhh....eeeee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee..hhhhh....hhhhhhhhhhhhhhhhhhhhhh......eeeeee............hhhhhh.hhhhhhhhhhhh......hhhhhhhhhhhhh...hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwx C   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Chain D from PDB  Type:PROTEIN  Length:252
 aligned with Q93D82_RHIRD | Q93D82 from UniProtKB/TrEMBL  Length:254

    Alignment length:252
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251  
         Q93D82_RHIRD     2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
               SCOP domains d1pwxd_ D: Halohydrin dehalogenase HheC                                                                                                                                                                                                                      SCOP domains
               CATH domains 1pwxD00 D:2-253 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                          CATH domains
           Pfam domains (1) --------adh_short_C2-1pwxD01 D:10-244                                                                                                                                                                                                              --------- Pfam domains (1)
           Pfam domains (2) --------adh_short_C2-1pwxD02 D:10-244                                                                                                                                                                                                              --------- Pfam domains (2)
           Pfam domains (3) --------adh_short_C2-1pwxD03 D:10-244                                                                                                                                                                                                              --------- Pfam domains (3)
           Pfam domains (4) --------adh_short_C2-1pwxD04 D:10-244                                                                                                                                                                                                              --------- Pfam domains (4)
         Sec.struct. author .eeee......hhhhhhhhhhhh..eeee.hhhhhhhhhhhhhhhhh..eee....hhhhhhhhhhhhhh...eeeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee..hhhhh....hhhhhhhhhhhhhhhhhhhhhh......eeeeee............hhhhhh.hhhhhhhhh.........hhhhhhhhhhhhhhh.hhhhh..eeee.............. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1pwx D   2 STAIVTNVKHFGGMGSALRLSEAGHTVACHDESFKQKDELEAFAETYPQLKPMSEQEPAELIEAVTSAYGQVDVLVSNDIFAPEFQPIDKYAVEDYRGAVEALQIRPFALVNAVASQMKKRKSGHIIFITSATPFGPWKELSTYTSARAGACTLANALSKELGEYNIPVFAIGPNYLHSEDSPYFYPTEPWKTNPEHVAHVKKVTALQRLGTQKELGELVAFLASGSCDYLTGQVFWLAGGFPMIERWPGMP 253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: Halohydrin dehalogenase HheC (5)

Agrobacterium tumefaciens [TaxId: 358] (5)

1a	d1pwxa_	A:
1b	d1pwxb_	B:
1c	d1pwxc_	C:
1d	d1pwxd_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Agrobacterium tumefaciens. Organism_taxid: 358. (3)

1a	1pwxA00	A:2-253
1b	1pwxB00	B:2-253
1c	1pwxC00	C:2-253
1d	1pwxD00	D:2-253

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: adh_short_C2 (98)

Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium radiobacter) (2)

1a	adh_short_C2-1pwxD01	D:10-244
1b	adh_short_C2-1pwxD02	D:10-244
1c	adh_short_C2-1pwxD03	D:10-244
1d	adh_short_C2-1pwxD04	D:10-244

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1PWX)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Glu A:190 - Pro A:191	[ RasMol ]
		Glu B:190 - Pro B:191	[ RasMol ]
		Glu C:190 - Pro C:191	[ RasMol ]
		Glu D:190 - Pro D:191	[ RasMol ]
		Phe A:243 - Pro A:244	[ RasMol ]
		Phe B:243 - Pro B:244	[ RasMol ]
		Phe C:243 - Pro C:244	[ RasMol ]
		Phe D:243 - Pro D:244	[ RasMol ]
		Tyr A:185 - Phe A:186	[ RasMol ]
		Tyr B:185 - Phe B:186	[ RasMol ]
		Tyr C:185 - Phe C:186	[ RasMol ]
		Tyr D:185 - Phe D:186	[ RasMol ]

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	1pwx
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	Q93D82_RHIRD \| Q93D82	:	1pwz 1px0 1zmt 1zo8 3zn2 4ixt 4ixw 4iy1 5kvc 5kwe

1pwz	HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH (R)-STYRENE OXIDE AND CHLORIDE
1px0	HALOALCOHOL DEHALOGENASE HHEC COMPLEXED WITH THE HALOALCOHOL MIMIC (R)-1-PARA-NITRO-PHENYL-2-AZIDO-ETHANOL

Description

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Ligands, Modified Residues, Ions (1, 8)

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Cis Peptide Bonds (12, 12)

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