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Asym./Biol. Unit (Jmol Viewer)

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Title :   CARBONMONOXY TROUT HEMOGLOBIN I

Authors :   J. Tame, J. Wilson

Date :   21 Jun 96 (Deposition) - 11 Jan 97 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Heme, Oxygen Transport, Respiratory Protein, Erythrocyte (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. R. Tame, J. C. Wilson, R. E. Weber
The Crystal Structures Of Trout Hb I In The Deoxy And Carbonmonoxy Forms.
J. Mol. Biol. V. 259 749 1996
PubMed-ID: 8683580 | Reference-DOI: 10.1006/JMBI.1996.0355
(for further references see the PDB file header)

Molecule 1 - HEMOGLOBIN I
	Chains	:	A, C
	Engineered	:	YES
	Mutation	:	YES
	Organism Common	:	RAINBOW TROUT
	Organism Scientific	:	ONCORHYNCHUS MYKISS
	Organism Taxid	:	8022
	Other Details	:	CARBONMONOXY

Molecule 2 - HEMOGLOBIN I
	Chains	:	B, D
	Engineered	:	YES
	Mutation	:	YES
	Organism Common	:	RAINBOW TROUT
	Organism Scientific	:	ONCORHYNCHUS MYKISS
	Organism Taxid	:	8022
	Other Details	:	CARBONMONOXY
	Tissue	:	BLOOD

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 10)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	CMO	4	Ligand/Ion	CARBON MONOXIDE
3	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:42 , PHE A:43 , HIS A:45 , TRP A:46 , HIS A:59 , LEU A:84 , LEU A:87 , HIS A:88 , VAL A:94 , ASN A:98 , LEU A:102 , LEU A:137 , CMO A:144 , LYS C:16	BINDING SITE FOR RESIDUE HEM A 143
2	AC2	SOFTWARE	HIS A:59 , ILE A:63 , HEM A:143	BINDING SITE FOR RESIDUE CMO A 144
3	AC3	SOFTWARE	THR B:38 , TYR B:41 , PHE B:42 , HIS B:63 , ALA B:70 , LEU B:71 , LEU B:88 , HIS B:92 , LEU B:96 , ASN B:102 , PHE B:103 , LEU B:106 , CMO B:149	BINDING SITE FOR RESIDUE HEM B 148
4	AC4	SOFTWARE	HIS B:63 , VAL B:67 , HEM B:148	BINDING SITE FOR RESIDUE CMO B 149
5	AC5	SOFTWARE	TYR C:42 , PHE C:43 , HIS C:45 , TRP C:46 , HIS C:59 , LEU C:87 , HIS C:88 , LEU C:92 , ASN C:98 , LEU C:102 , VAL C:133 , LEU C:137 , CMO C:144 , HOH C:179	BINDING SITE FOR RESIDUE HEM C 143
6	AC6	SOFTWARE	HIS C:59 , ILE C:63 , HEM C:143	BINDING SITE FOR RESIDUE CMO C 144
7	AC7	SOFTWARE	THR D:38 , TYR D:41 , PHE D:42 , HIS D:63 , LEU D:88 , HIS D:92 , ASN D:102 , PHE D:103 , LEU D:106 , CMO D:149	BINDING SITE FOR RESIDUE HEM D 148
8	AC8	SOFTWARE	HIS D:63 , VAL D:67 , HEM D:148	BINDING SITE FOR RESIDUE CMO D 149

(no "SS Bond" information available for 1OUU)

(no "Cis Peptide Bond" information available for 1OUU)

(no "SAP(SNP)/Variant" information available for 1OUU)

Asymmetric/Biological Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GLOBIN	PS01033	Globin family profile.	HBA1_ONCMY	2-144	2	A:2-142 C:2-142
1	GLOBIN	PS01033	Globin family profile.	HBB1_ONCMY	4-145	2	B:4-145 D:4-145

(no "Exon" information available for 1OUU)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
 aligned with HBA1_ONCMY | P02019 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:145
                             1                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139     
           HBA1_ONCMY     - -SLTAKDKSVVKAFWGKISGKADVVGAEALGRDKMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKYR 144
               SCOP domains d1ouua_ A: Hemoglobin, alpha-cha  in                                                                                                              SCOP domains
               CATH domains -1ouuA00 A:1-142 Globins                                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhh.hhhhhhh..........hhhhhhhhhhhhhhhhhhh....hhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GLOBIN  PDB: A:2-142 UniProt: 2-144                                                                                                             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouu A   0 xSLTAKDKSVVKAFWGKISGKADVVGAEALGR--MLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKYR 142
                            |        9        19        29 |  |   37        47        57        67        77        87        97       107       117       127       137     
                            |                             31 32                                                                                                              
                            0-ACE

Chain B from PDB  Type:PROTEIN  Length:146
 aligned with HBB1_ONCMY | P02142 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      
           HBB1_ONCMY     1 VEWTDAEKSTISAVWGKVNIDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146
               SCOP domains d1ouub_ B: Hemoglobin, beta-chain                                                                                                                  SCOP domains
               CATH domains 1ouuB00 B:1-146 Globins                                                                                                                            CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhh.hhh.....hhhhh..hhhhhhhhhhhhhhhhhhh....hhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---GLOBIN  PDB: B:4-145 UniProt: 4-145                                                                                                           - PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouu B   1 VEWTDAEKSTISAVWGKVNIDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:143
 aligned with HBA1_ONCMY | P02019 from UniProtKB/Swiss-Prot  Length:144

    Alignment length:145
                             1                                                                                                                                               
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139     
           HBA1_ONCMY     - -SLTAKDKSVVKAFWGKISGKADVVGAEALGRDKMLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKYR 144
               SCOP domains d1ouuc_ C: Hemoglobin, alpha-cha  in                                                                                                              SCOP domains
               CATH domains -1ouuC00 C:1-142 Globins                                                                                                                          CATH domains
           Pfam domains (1) ------Globin-1ouuC01 C:6-107    --                                                                            ----------------------------------- Pfam domains (1)
           Pfam domains (2) ------Globin-1ouuC02 C:6-107    --                                                                            ----------------------------------- Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhh.hhhhhhh..........hhhhhhhhhhhhhhhhhhhh...hhhh.hhhhhhhh......hhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhh.hhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GLOBIN  PDB: C:2-142 UniProt: 2-144                                                                                                             PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouu C   0 xSLTAKDKSVVKAFWGKISGKADVVGAEALGR--MLTAYPQTKTYFSHWADLSPGSGPVKKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKILSHNILVTLAIHFPSDFTPEVHIAVDKFLAAVSAALADKYR 142
                            |        9        19        29 |  |   37        47        57        67        77        87        97       107       117       127       137     
                            0-ACE                         31 32

Chain D from PDB  Type:PROTEIN  Length:146
 aligned with HBB1_ONCMY | P02142 from UniProtKB/Swiss-Prot  Length:146

    Alignment length:146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140      
           HBB1_ONCMY     1 VEWTDAEKSTISAVWGKVNIDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146
               SCOP domains d1ouud_ D: Hemoglobin, beta-chain                                                                                                                  SCOP domains
               CATH domains 1ouuD00 D:1-146 Globins                                                                                                                            CATH domains
           Pfam domains (1) ------Globin-1ouuD01 D:7-111                                                                                   ----------------------------------- Pfam domains (1)
           Pfam domains (2) ------Globin-1ouuD02 D:7-111                                                                                   ----------------------------------- Pfam domains (2)
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.hhhhhh.........hhhhh..hhhhhhhhhhhhhhhhhhh....hhhh.hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) ---GLOBIN  PDB: D:4-145 UniProt: 4-145                                                                                                           - PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ouu D   1 VEWTDAEKSTISAVWGKVNIDEIGPLALARVLIVYPWTQRYFGSFGNVSTPAAIMGNPKVAAHGKVVCGALDKAVKNMGNILATYKSLSETHANKLFVDPDNFRVLADVLTIVIAAKFGASFTPEIQATWQKFMKVVVAAMGSRYF 146
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: Globin-like (1351)

Superfamily: Globin-like (1308)

Family: Globins (1157)

Protein domain: Hemoglobin, alpha-chain (292)

Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022] (2)

1a	d1ouua_	A:
1b	d1ouuc_	C:

Protein domain: Hemoglobin, beta-chain (292)

Rainbow trout (Oncorhynchus mykiss) [TaxId: 8022] (2)

2a	d1ouub_	B:
2b	d1ouud_	D:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Globin-like (786)

Homologous Superfamily: Globins (743)

Rainbow trout (Oncorhynchus mykiss) (4)

1a	1ouuB00	B:1-146
1b	1ouuA00	A:1-142
1c	1ouuC00	C:1-142
1d	1ouuD00	D:1-146

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Globin (291)

Family: Globin (264)

Oncorhynchus mykiss (Rainbow trout) (Salmo gairdneri) (3)

1a	Globin-1ouuC01	C:6-107
1b	Globin-1ouuC02	C:6-107
1c	Globin-1ouuD01	D:7-111
1d	Globin-1ouuD02	D:7-111

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,C (HBA1_ONCMY | P02019)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Chain B,D (HBB1_ONCMY | P02142)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005833	hemoglobin complex	An iron-containing, oxygen carrying complex. In vertebrates it is made up of two pairs of associated globin polypeptide chains, each chain carrying a noncovalently bound heme prosthetic group.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1ouu)

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (8, 8)

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