1OT1 - JenaLib

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:411 , ARG A:412 , TRP A:413 , ILE A:414 , SER A:445 , GLY A:446 , ALA A:539 , ASP A:540 , HOH A:1712 , HOH A:1780 , HOH A:1899 , HOH A:1947 , HOH A:1949 , HOH A:1962 , HOH A:2143 , HOH A:2277 , HOH A:2373 , HOH A:2402 , HOH A:2487	BINDING SITE FOR RESIDUE MAL A 1687
02	AC2	SOFTWARE	TYR A:100 , HIS A:140 , ASP A:229 , ALA A:230 , GLU A:257 , HIS A:327 , ASP A:328 , ARG A:375 , GLC A:696 , MPD A:1702	BINDING SITE FOR RESIDUE BGC A 695
03	AC3	SOFTWARE	TYR A:100 , TRP A:101 , TYR A:195 , ASP A:371 , ARG A:375 , BGC A:695 , GLC A:697 , HOH A:1875 , HOH A:2119	BINDING SITE FOR RESIDUE GLC A 696
04	AC4	SOFTWARE	TYR A:89 , ASP A:371 , GLC A:696 , GLC A:698 , HOH A:2030	BINDING SITE FOR RESIDUE GLC A 697
05	AC5	SOFTWARE	TYR A:89 , ASP A:196 , GLC A:697 , GLC A:699	BINDING SITE FOR RESIDUE GLC A 698
06	AC6	SOFTWARE	TYR A:195 , GLC A:698 , GLC A:700 , HOH A:1884 , HOH A:2012 , HOH A:2349	BINDING SITE FOR RESIDUE GLC A 699
07	AC7	SOFTWARE	GLY A:180 , ASN A:193 , TYR A:195 , ASP A:196 , GLY A:454 , SER A:455 , GLC A:699 , GLC A:701 , HOH A:1893 , HOH A:1895 , HOH A:2203	BINDING SITE FOR RESIDUE GLC A 700
08	AC8	SOFTWARE	SER A:145 , SER A:146 , ASP A:147 , SER A:455 , TYR A:456 , GLC A:700 , HOH A:1971 , HOH A:2008 , HOH A:2021 , HOH A:2203 , HOH A:2522	BINDING SITE FOR RESIDUE GLC A 701
09	AC9	SOFTWARE	ARG A:339 , SER A:384 , THR A:386 , GLC A:1689 , HOH A:1882 , HOH A:2296 , HOH A:2393	BINDING SITE FOR RESIDUE BGC A 1688
10	BC1	SOFTWARE	LYS A:651 , GLU A:663 , BGC A:1688 , GLC A:1690 , HOH A:1760 , HOH A:1901 , HOH A:2118 , HOH A:2308	BINDING SITE FOR RESIDUE GLC A 1689
11	BC2	SOFTWARE	TRP A:616 , TRP A:662 , ASN A:667 , GLC A:1689 , GLC A:1691 , HOH A:1797 , HOH A:2085	BINDING SITE FOR RESIDUE GLC A 1690
12	BC3	SOFTWARE	GLC A:1690	BINDING SITE FOR RESIDUE GLC A 1691
13	BC4	SOFTWARE	LEU A:600 , GLC A:703	BINDING SITE FOR RESIDUE BGC A 702
14	BC5	SOFTWARE	THR A:598 , ALA A:599 , LEU A:600 , GLN A:628 , TYR A:633 , BGC A:702 , GLC A:704 , HOH A:2174	BINDING SITE FOR RESIDUE GLC A 703
15	BC6	SOFTWARE	ALA A:599 , LEU A:600 , GLY A:601 , GLN A:602 , ASN A:603 , ASN A:627 , GLN A:628 , GLC A:703 , GLC A:705 , HOH A:2505	BINDING SITE FOR RESIDUE GLC A 704
16	BC7	SOFTWARE	THR A:185 , GLC A:704 , HOH A:2204	BINDING SITE FOR RESIDUE GLC A 705
17	BC8	SOFTWARE	ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:2488	BINDING SITE FOR RESIDUE CA A 1692
18	BC9	SOFTWARE	ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233 , HOH A:1734 , HOH A:1735 , HOH A:2489	BINDING SITE FOR RESIDUE CA A 1693
19	CC1	SOFTWARE	ALA A:315 , ASP A:577 , HOH A:1788 , HOH A:1894 , HOH A:1996 , HOH A:2066 , HOH A:2109	BINDING SITE FOR RESIDUE CA A 1694
20	CC2	SOFTWARE	GLY A:532 , GLY A:558 , ASN A:560 , TYR A:561 , ASN A:562 , HOH A:2186 , HOH A:2370	BINDING SITE FOR RESIDUE EPE A 1711
21	CC3	SOFTWARE	GLN A:586 , SER A:674 , HOH A:1905 , HOH A:2053	BINDING SITE FOR RESIDUE MPD A 1701
22	CC4	SOFTWARE	HIS A:233 , GLU A:257 , ASP A:328 , BGC A:695 , HOH A:1961	BINDING SITE FOR RESIDUE MPD A 1702
23	CC5	SOFTWARE	PHE A:236 , GLU A:275 , SER A:276 , ILE A:622 , HOH A:1955 , HOH A:2147 , HOH A:2217	BINDING SITE FOR RESIDUE MPD A 1703
24	CC6	SOFTWARE	ASP A:220	BINDING SITE FOR RESIDUE ACY A 1705
25	CC7	SOFTWARE	LEU A:438 , ALA A:484	BINDING SITE FOR RESIDUE ACY A 1704
26	CC8	SOFTWARE	THR A:481 , ALA A:555	BINDING SITE FOR RESIDUE ACY A 1708
27	CC9	SOFTWARE	HOH A:1948	BINDING SITE FOR RESIDUE ACY A 1710

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:686
 aligned with CDGT2_BACCI | P43379 from UniProtKB/Swiss-Prot  Length:713

    Alignment length:686
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707      
          CDGT2_BACCI    28 APDTSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASISGLVTSLPQGSYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAVAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLKKQGSTVTWEGGSNHTFTAPSSGTATINVNWQP 713
               SCOP domains d1ot1a4 A:1-406 Cyclodextrin glycosyltransferase                                                                                                                                                                                                                                                                                                                                                                      d1ot1a3 A:407-495 Cyclodextrin glycosyltransferase                                       d1ot1a1 A:496-581 Cyclomaltodextrin glycanotransferase, domain D                      d1ot1a2 A:582-686 Cyclodextrin glycosyltransferase, C-terminal domain                                     SCOP domains
               CATH domains 1ot1A01 A:1-400 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                    1ot1A02 A:401-495 Golgi alpha-mannosidase II                                                   1ot1A03 A:496-582 Immunoglobulins                                                      1ot1A04 A:583-685 Immunoglobulins                                                                      - CATH domains
               Pfam domains ---------------------------------------------------Alpha-amylase-1ot1A04 A:52-372                                                                                                                                                                                                                                                                                                   ----------------------------------------Alpha-amylase_C-1ot1A02 A:413-495                                                  ---TIG-1ot1A01 A:499-581                                                              ----CBM_20-1ot1A03 A:586-682                                                                         ---- Pfam domains
         Sec.struct. author ................eeeehhhhh...hhhhh.hhhhh.............hhhhhhhhhhh..hhhhh..eeee...eee....ee....ee.......eeeeeee.....hhhhhhhhhhhhhhh..eeeeee...eeee.............eee..eeee...................hhhhhhhh....eee....hhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhh..ee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhh.ee...............hhhhhhhhhhhhhhh..eeeee.hhhhh...................hhhhhhhhhhhhhhhhhhhhhhheeeeeee...eeeeeeee..eeeeeeee......eee.........eee............eeehhhhh...eee....eeeeee.......eeeeee..ee....eeeeeee.......eeee..eeehhh.eeeee..eeeee......eeeeeeee.........eeeeee....eeeeeeeee........eeeeee.hhhhh..hhhhh..............eeeeeeee...eeeeeeeeee..eeee.....eeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CBM20  PDB: A:581-686 UniProt: 608-713                                                                     PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1ot1 A   1 APDTSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKSNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASISGLVTSLPQGSYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAVAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLKKQGSTVTWEGGSNHTFTAPSSGTATINVNWQP 686
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (4, 4)

CATH Domains (3, 4)

Pfam Domains (4, 4)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CDGT2_BACCI | P43379)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0043895	cyclomaltodextrin glucanotransferase activity	Catalysis of the cyclization of part of a 1,4-alpha-D-glucan chain by formation of a 1,4-alpha-D-glucosidic bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:2001070	starch binding	Interacting selectively and non-covalently with starch.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Cis Peptide Bonds
		Asp A:371 - Pro A:372	[ RasMol ]
		Gly A:505 - Pro A:506	[ RasMol ]
		Gly A:623 - Pro A:624	[ RasMol ]
		Tyr A:633 - Pro A:634	[ RasMol ]

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	1ot1
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
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	CDGT2_BACCI \| P43379
		Comparative Protein Structure Models	:	ModBase
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	2.4.1.19
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 27)

Sites (27, 27)