1D3C - JenaLib

Asymmetric Unit (30, 30)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TRP A:413 , ILE A:414 , SER A:445 , GLY A:446 , ALA A:539 , ASP A:540 , GLC A:691 , HOH A:770 , HOH A:951	BINDING SITE FOR RESIDUE GLC A 690
02	AC2	SOFTWARE	GLU A:411 , ARG A:412 , GLY A:446 , GLC A:690 , HOH A:923 , HOH A:1113 , HOH A:1165 , HOH A:1289	BINDING SITE FOR RESIDUE GLC A 691
03	AC3	SOFTWARE	GLC A:693 , GLC A:699 , HOH A:1259	BINDING SITE FOR RESIDUE GLC A 692
04	AC4	SOFTWARE	PHE A:183 , LYS A:232 , PHE A:259 , GLC A:692 , GLC A:694 , HOH A:754 , HOH A:854 , HOH A:1195	BINDING SITE FOR RESIDUE GLC A 693
05	AC5	SOFTWARE	TYR A:195 , ALA A:230 , LYS A:232 , HIS A:233 , GLN A:257 , GLC A:693 , GLC A:695 , HOH A:1130	BINDING SITE FOR RESIDUE GLC A 694
06	AC6	SOFTWARE	TYR A:100 , HIS A:140 , ARG A:227 , ASN A:229 , GLN A:257 , HIS A:327 , ASP A:328 , GLC A:694 , GLC A:696	BINDING SITE FOR RESIDUE GLC A 695
07	AC7	SOFTWARE	HIS A:98 , TYR A:100 , TRP A:101 , ASP A:371 , ARG A:375 , GLC A:695 , GLC A:697 , HOH A:984	BINDING SITE FOR RESIDUE GLC A 696
08	AC8	SOFTWARE	ARG A:47 , ASP A:371 , GLC A:696 , GLC A:698 , HOH A:984 , HOH A:1171 , HOH A:1221	BINDING SITE FOR RESIDUE GLC A 697
09	AC9	SOFTWARE	GLC A:697 , GLC A:699	BINDING SITE FOR RESIDUE GLC A 698
10	BC1	SOFTWARE	GLC A:692 , GLC A:698	BINDING SITE FOR RESIDUE GLC A 699
11	BC2	SOFTWARE	TRP A:616 , GLC A:701 , GLC A:707 , HOH A:995	BINDING SITE FOR RESIDUE GLC A 700
12	BC3	SOFTWARE	GLC A:700 , GLC A:702	BINDING SITE FOR RESIDUE GLC A 701
13	BC4	SOFTWARE	GLC A:701 , GLC A:703	BINDING SITE FOR RESIDUE GLC A 702
14	BC5	SOFTWARE	GLC A:702 , GLC A:704	BINDING SITE FOR RESIDUE GLC A 703
15	BC6	SOFTWARE	ARG A:339 , GLU A:343 , GLC A:703 , GLC A:705 , HOH A:1262	BINDING SITE FOR RESIDUE GLC A 704
16	BC7	SOFTWARE	THR A:385 , GLC A:704 , GLC A:706 , HOH A:869 , HOH A:990 , HOH A:1170 , HOH A:1262 , HOH A:1276 , HOH A:1352	BINDING SITE FOR RESIDUE GLC A 705
17	BC8	SOFTWARE	LYS A:651 , TRP A:662 , GLU A:663 , GLC A:705 , GLC A:707 , HOH A:820 , HOH A:1219 , HOH A:1270 , HOH A:1352	BINDING SITE FOR RESIDUE GLC A 706
18	BC9	SOFTWARE	TRP A:662 , ASN A:667 , GLC A:700 , GLC A:706 , HOH A:1025	BINDING SITE FOR RESIDUE GLC A 707
19	CC1	SOFTWARE	ALA A:599 , LEU A:600 , GLY A:601 , GLN A:602 , ASN A:603 , ASN A:627 , GLN A:628 , GLC A:709 , GLC A:715	BINDING SITE FOR RESIDUE GLC A 708
20	CC2	SOFTWARE	GLN A:628 , GLC A:708 , GLC A:710 , HOH A:994 , HOH A:1308	BINDING SITE FOR RESIDUE GLC A 709
21	CC3	SOFTWARE	THR A:185 , GLC A:709 , GLC A:711 , HOH A:1278	BINDING SITE FOR RESIDUE GLC A 710
22	CC4	SOFTWARE	GLC A:710 , GLC A:712	BINDING SITE FOR RESIDUE GLC A 711
23	CC5	SOFTWARE	GLC A:711 , GLC A:713	BINDING SITE FOR RESIDUE GLC A 712
24	CC6	SOFTWARE	GLC A:712 , GLC A:714	BINDING SITE FOR RESIDUE GLC A 713
25	CC7	SOFTWARE	GLC A:713 , GLC A:715	BINDING SITE FOR RESIDUE GLC A 714
26	CC8	SOFTWARE	THR A:598 , ALA A:599 , LEU A:600 , TYR A:633 , GLC A:708 , GLC A:714	BINDING SITE FOR RESIDUE GLC A 715
27	CC9	SOFTWARE	ASP A:27 , ASN A:29 , ASN A:32 , ASN A:33 , GLY A:51 , ASP A:53 , HOH A:950	BINDING SITE FOR RESIDUE CA A 687
28	DC1	SOFTWARE	ASN A:139 , ILE A:190 , ASP A:199 , HIS A:233 , HOH A:866 , HOH A:867 , HOH A:915	BINDING SITE FOR RESIDUE CA A 688
29	DC2	SOFTWARE	ALA A:315 , ASP A:577 , HOH A:806 , HOH A:927 , HOH A:978 , HOH A:1057 , HOH A:1344	BINDING SITE FOR RESIDUE CA A 689
30	DC3	SOFTWARE	ILE A:378 , HOH A:814 , HOH A:1207	BINDING SITE FOR RESIDUE MPD A 716

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:686
 aligned with CDGT2_BACCI | P43379 from UniProtKB/Swiss-Prot  Length:713

    Alignment length:686
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707      
          CDGT2_BACCI    28 APDTSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMDAVKHMPFGWQKSFMAAVNNYKPVFTFGEWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASISGLVTSLPQGSYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAVAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLKKQGSTVTWEGGSNHTFTAPSSGTATINVNWQP 713
               SCOP domains d1d3ca4 A:1-406 Cyclodextrin glycosyltransferase                                                                                                                                                                                                                                                                                                                                                                      d1d3ca3 A:407-496 Cyclodextrin glycosyltransferase                                        d1d3ca1 A:497-583 Cyclomaltodextrin glycanotransferase, domain D                       d1d3ca2 A:584-686 Cyclodextrin glycosyltransferase, C-terminal domain                                   SCOP domains
               CATH domains 1d3cA01 A:1-400 Glycosidases                                                                                                                                                                                                                                                                                                                                                                                    1d3cA02 A:401-495 Golgi alpha-mannosidase II                                                   1d3cA03 A:496-582 Immunoglobulins                                                      1d3cA04 A:583-685 Immunoglobulins                                                                      - CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeehhhhh...hhhhh.hhhh..............hhhhhhhhhhh.........eeee...eee....ee....ee.......eeeeeee.....hhhhhhhhhhhhhhh..eeeeee...eeee.............eee..eeee...................hhhhhhhh....eee....hhhhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhh..ee.hhhhhhhhhhhhh....hhhhhhhhhhhhhhhh.hhhh.ee...............hhhhhhhhhhhhhh...eeeee.hhhhh......hhhhh........hhhhhhhhhhhhhhhhhhhhhhheeeeeee...eeeeeee...eeeeeeee......eee.........eee............eeehhhh....eee....eeeeeee......eeeeee..ee....eeeeeee.......eeee..eeehhh.eeee...eeeee......eeeeeeee.........eeeeee....eeeeeeeee........eeeeee.hhhhh..hhhhh..............eeeeeeee...eeeeeeeeee..eeee.....eeee......eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CBM20  PDB: A:581-686 UniProt: 608-713                                                                     PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1d3c A   1 APDTSVSNKQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGTCTNLRLYCGGDWQGIINKINDGYLTGMGVTAIWISQPVENIYSIINYSGVNNTAYHGYWARDFKKTNPAYGTIADFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFHHNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMWLDLGIDGIRMNAVKHMPFGWQKSFMAAVNNYKPVFTFGQWFLGVNEVSPENHKFANESGMSLLDFRFAQKVRQVFRDNTDNMYGLKAMLEGSAADYAQVDDQVTFIDNHDMERFHASNANRRKLEQALAFTLTSRGVPAIYYGTEQYMSGGTDPDNRARIPSFSTSTTAYQVIQKLAPLRKCNPAIAYGSTQERWINNDVLIYERKFGSNVAVVAVNRNLNAPASISGLVTSLPQGSYNDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVWQYTAATATPTIGHVGPMMAKPGVTITIDGRGFGSSKGTVYFGTTAVSGADITSWEDTQIKVKIPAVAGGNYNIKVANAAGTASNVYDNFEVLSGDQVSVRFVVNNATTALGQNVYLTGSVSELGNWDPAKAIGPMYNQVVYQYPNWYYDVSVPAGKTIEFKFLKKQGSTVTWEGGSNHTFTAPSSGTATINVNWQP 686
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (4, 4)

CATH Domains (3, 4)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (CDGT2_BACCI | P43379)

molecular function
	GO:0030246	carbohydrate binding	Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0043169	cation binding	Interacting selectively and non-covalently with cations, charged atoms or groups of atoms with a net positive charge.
	GO:0043895	cyclomaltodextrin glucanotransferase activity	Catalysis of the cyclization of part of a 1,4-alpha-D-glucan chain by formation of a 1,4-alpha-D-glucosidic bond.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:2001070	starch binding	Interacting selectively and non-covalently with starch.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016757	transferase activity, transferring glycosyl groups	Catalysis of the transfer of a glycosyl group from one compound (donor) to another (acceptor).
biological process
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
cellular component
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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	Cis Peptide Bonds
		Asp A:371 - Pro A:372	[ RasMol ]
		Gly A:505 - Pro A:506	[ RasMol ]
		Gly A:623 - Pro A:624	[ RasMol ]
		Tyr A:633 - Pro A:634	[ RasMol ]

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 30)

Sites (30, 30)

SS Bonds (1, 1)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (4, 4)

CATH Domains (3, 4)

Pfam Domains (0, 0)

Gene Ontology (10, 10)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File