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(-) Description

Title :  STRUCTURAL MODELLING OF E. COLI HFQ
 
Authors :  V. Arluison, C. Mayer, P. Regnier
Date :  04 Mar 03  (Deposition) - 16 Mar 04  (Release) - 16 Mar 04  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F
Keywords :  Rna Binding, Sm-Like (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Arluison, C. Mayer, P. Regnier
Structural Modelling Of E. Coli Hfq
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HFQ PROTEIN
    Chains: A, B, C, D, E, F
    Escherichia Coli O157: H7, AND SHIGELLA FLEXNERI
    Fragment: RESIDUES 5-64
    Organism Common: BACTERIA
    Organism Scientific: ESCHERICHIA COLI, ESCHERICHIA COLI O6,
    Synonym: HOST FACTOR-I PROTEIN, HF-I, HF-1

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OOU)

(-) Sites  (0, 0)

(no "Site" information available for 1OOU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OOU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OOU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OOU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OOU)

(-) Exons   (0, 0)

(no "Exon" information available for 1OOU)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou A  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain A from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou A  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain A from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou A  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain A from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou A  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain B from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou B  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain B from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou B  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain B from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou B  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain B from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou B  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain C from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou C  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain C from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou C  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain C from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou C  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain C from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou C  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain D from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou D  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain D from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou D  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain D from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou D  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain D from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou D  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain E from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou E  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain E from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou E  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain E from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou E  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain E from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou E  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain F from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECO57 | P0A6X5 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECO57    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou F  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain F from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOL6 | P0A6X4 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOL6    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou F  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain F from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_ECOLI | P0A6X3 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_ECOLI    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou F  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55         


Chain F from PDB  Type:PROTEIN  Length:59
 aligned with HFQ_SHIFL | P0A6X6 from UniProtKB/Swiss-Prot  Length:102

    Alignment length:59
                                    15        25        35        45        55         
             HFQ_SHIFL    6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
               SCOP domains ----------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh...eeeee....eeee........eeeee...eeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------- Transcript
                  1oou F  6 SLQDPFLNALRRERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVP 64
                                    15        25        35        45        55
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1OOU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1OOU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OOU)

(-) Gene Ontology  (8, 14)

Theoretical Model(hide GO term definitions)
Chain A,B,C,D,E,F   (HFQ_SHIFL | P0A6X6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Chain A,B,C,D,E,F   (HFQ_ECOLI | P0A6X3)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003681    bent DNA binding    Interacting selectively and non-covalently with DNA in a bent conformation.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0040033    negative regulation of translation, ncRNA-mediated    Any process, mediated by small non-coding RNAs, that stops, prevents or reduces the rate that mRNAs are effectively translated into protein.
    GO:0045975    positive regulation of translation, ncRNA-mediated    Any process, mediated by small non-coding RNAs, that activates or increases the rate that mRNAs are effectively translated into protein.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A,B,C,D,E,F   (HFQ_ECOL6 | P0A6X4)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

Chain A,B,C,D,E,F   (HFQ_ECO57 | P0A6X5)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
biological process
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.

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  1oou
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HFQ_ECO57 | P0A6X5: 1m7c 1oov
        HFQ_ECOL6 | P0A6X4: 1m7c 1oov
        HFQ_ECOLI | P0A6X3: 1hk9 1m7c 1oov 2y90 2yht 3gib 3qhs 3qo3 3rer 3res 3vu3 4jri 4jrk 4juv 4rcb 4rcc 4v2s
        HFQ_SHIFL | P0A6X6: 1m7c 1oov

(-) Related Entries Specified in the PDB File

1kq1 CRYSTAL STRUCTURE OF S. AUREUS HFQ
1oov