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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PHENYLALANINE AND MANGANESE
 
Authors :  V. Koenig, A. Pfeil, G. Heinrich, G. Braus, T. R. Schneider
Date :  18 Apr 03  (Deposition) - 15 Apr 04  (Release) - 16 Jun 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Biol. Unit 5:  E,F,G,H  (1x)
Biol. Unit 6:  A,B,C,D  (1x)
Keywords :  Beta-Alpha-Barrel, Lyase, Aromatic Amino-Acid Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Koenig, A. Pfeil, G. Heinrich, G. Braus, T. R. Schneider
Substrate And Metal Complexes Of 3-Deoxy-D-Arabino-Heptulosonate-7-Phosphate Synthase From Saccharomyces Cerevisiae Provide New Insights Into The Catalytic Mechanism.
J. Mol. Biol. V. 337 675 2004
PubMed-ID: 15019786  |  Reference-DOI: 10.1016/J.JMB.2004.01.055

(-) Compounds

Molecule 1 - PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 4.1.2.15
    Engineered: YES
    Organism Common: BAKER'S YEAST
    Organism Scientific: SACCHAROMYCES CEREVISIAE
    Organism Taxid: 4932
    Other Details: LIGANDS ARE PHENYLALANINE ION, MANGANESE
    Other Details - Source: SACCHAROMYCES CEREVISIAE
    Strain: RH1326
    Synonym: PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE, 3-DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, PHOSPHO-2-DEHYDRO- 3-DEOXYHEPTONATE ALDOLASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH
Biological Unit 5 (1x):     EFGH
Biological Unit 6 (1x): ABCD    

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 12)

Asymmetric Unit (2, 12)
No.NameCountTypeFull Name
1MN8Ligand/IonMANGANESE (II) ION
2PHE4Mod. Amino AcidPHENYLALANINE
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE-1Mod. Amino AcidPHENYLALANINE
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE2Mod. Amino AcidPHENYLALANINE
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE-1Mod. Amino AcidPHENYLALANINE
Biological Unit 4 (1, 2)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE2Mod. Amino AcidPHENYLALANINE
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE2Mod. Amino AcidPHENYLALANINE
Biological Unit 6 (1, 2)
No.NameCountTypeFull Name
1MN-1Ligand/IonMANGANESE (II) ION
2PHE2Mod. Amino AcidPHENYLALANINE

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWARECYS A:76 , HIS A:282 , GLU A:316 , ASP A:342BINDING SITE FOR RESIDUE MN A 400
02AC2SOFTWARECYS H:76 , HIS H:282 , GLU H:316 , ASP H:342BINDING SITE FOR RESIDUE MN B 400
03AC3SOFTWARECYS C:76 , HIS C:282 , GLU C:316 , ASP C:342BINDING SITE FOR RESIDUE MN C 400
04AC4SOFTWARECYS D:76 , HIS D:282 , GLU D:316 , ASP D:342BINDING SITE FOR RESIDUE MN D 400
05AC5SOFTWARECYS E:76 , HIS E:282 , GLU E:316 , ASP E:342BINDING SITE FOR RESIDUE MN E 400
06AC6SOFTWARECYS F:76 , HIS F:282 , GLU F:316 , ASP F:342BINDING SITE FOR RESIDUE MN F 400
07AC7SOFTWARECYS G:76 , HIS G:282 , GLU G:316 , ASP G:342BINDING SITE FOR RESIDUE MN G 400
08AC8SOFTWARECYS B:76 , HIS B:282 , GLU B:316 , ASP B:342BINDING SITE FOR RESIDUE MN H 400
09AC9SOFTWAREGLU C:21 , ASP C:22 , ILE C:25 , PRO D:165 , GLN D:166 , ALA D:169 , LEU D:194 , SER D:195BINDING SITE FOR RESIDUE PHE C1002
10BC1SOFTWARETHR C:162 , GLN C:166 , ALA C:169 , SER C:195 , GLU D:21 , ASP D:22 , TYR D:28BINDING SITE FOR RESIDUE PHE D1002
11BC2SOFTWAREGLU G:21 , ASP G:22 , THR H:162 , PRO H:165 , GLN H:166 , ALA H:169 , LEU H:190 , GLY H:193 , LEU H:194 , SER H:195BINDING SITE FOR RESIDUE PHE G1002
12BC3SOFTWARETHR G:162 , PRO G:165 , GLN G:166 , ALA G:169 , LEU G:190 , GLY G:193 , LEU G:194 , SER G:195 , GLU H:21 , ASP H:22 , ILE H:25BINDING SITE FOR RESIDUE PHE H1002

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OFR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1OFR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OFR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OFR)

(-) Exons   (1, 8)

Asymmetric Unit (1, 8)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1YBR249C1YBR249C.1II:717989-7168771113AROG_YEAST1-3703708A:20-370 (gaps)
B:19-370 (gaps)
C:20-370 (gaps)
D:18-370 (gaps)
E:20-370 (gaps)
F:20-370 (gaps)
G:19-1002 (gaps)
H:20-1002 (gaps)		351
352
351
353
351
351
352
351

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:351
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
          AROG_YEAST     20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofra_ A: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ofrA00 A:20-370 Aldolase class I                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.......-.................hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhh...eeeee.....eeeeee.....eeeeeee.......hhhhhhhhhhhh......eeeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee.............................hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: A:20-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                      Transcript 1
                1ofr A   20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR-TVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
                                    29        39        49        59        69        79        89        99       109    | |119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
                                                                                                                        114 |                                                                                                                                                                                                                                                              
                                                                                                                          116                                                                                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:348
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:352
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368  
          AROG_YEAST     19 AEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofrb_ B: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1ofrB00 B:19-370 Aldolase class I                                                                                                                                                                                                                                                                                                                                CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.......--...hhhhhh.......hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhh...eeeee.....eeeeee.....eeeee....-....hhhhhhhhhhhh.......eee.hhhhhh...hhhhhhhhhhhhhhhh......eeeee................-............hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: B:19-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                       Transcript 1
                1ofr B   19 AEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR--VGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGK-GTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKA-LKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
                                    28        38        48        58        68        78        88        98       108     | 118       128       138       148       158       168       178       188       198       208       218       228       238       248   | | 258       268       278       288       298       308       318       328   | | 338       348       358       368  
                                                                                                                         114  |                                                                                                                                    252 |                                                                           332 |                                    
                                                                                                                            117                                                                                                                                      254                                                                             334                                    


Chain C from PDB  Type:PROTEIN  Length:350
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:352
                                                                                                                                                                                                                                                                                                                                                                                        370 
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369| 
          AROG_YEAST     20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK-    -
               SCOP domains d1ofrc_ C: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1ofrC00 C:20-370 Aldolase class I                                                                                                                                                                                                                                                                                                                              - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeee.......--................hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhh...eeeee.....eeeeee.....eeeee.........hhhhhhhhhhhh......eeee.hhhhh.....hhhhhhhhhhhhhhh....eeeeeee............hhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: C:20-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                     - Transcript 1
                1ofr C   20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR--VGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKKF 1002
                                    29        39        49        59        69        79        89        99       109    |  119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369||
                                                                                                                        114  |                                                                                                                                                                                                                                                          370|
                                                                                                                           117                                                                                                                                                                                                                                                          1002


Chain D from PDB  Type:PROTEIN  Length:352
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:354
                                                                                                                                                                                                                                                                                                                                                                                          370 
                                    27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  | 
          AROG_YEAST     18 GAEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK-    -
               SCOP domains d1ofrd_ D: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1ofrD00 D:18-370 Aldolase class I                                                                                                                                                                                                                                                                                                                                - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhhh..eeeeee.......--...hhhhhh.......hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhhh..eeeee.....eeeeee.....eeeee.........hhhhhhhhhhhh......eeee........hhhhhhhhhhhhhhhhhh....eeeeeee............hhhhh............hhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
               Transcript 1 Exon 1.1  PDB: D:18-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                       - Transcript 1
                1ofr D   18 GAEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR--VGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKKF 1002
                                    27        37        47        57        67        77        87        97       107      |117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367  ||
                                                                                                                          114  |                                                                                                                                                                                                                                                          370|
                                                                                                                             117                                                                                                                                                                                                                                                          1002


Chain E from PDB  Type:PROTEIN  Length:339
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:351
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
          AROG_YEAST     20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofre_ E: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ofrE00 E:20-370 Aldolase class I                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee......-----..............hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhhh..eeeee.....eeeeee.....eeeeeee.......hhhhhhhhhh.........eeeeeee.......hhhhhhhhhhhhhhh......eeeee...........-------...........hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: E:20-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                      Transcript 1
                1ofr E   20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKP-----WKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIP-------KYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
                                    29        39        49        59        69        79        89        99       109   |   119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       | -     | 339       349       359       369 
                                                                                                                       113   119                                                                                                                                                                                                             327     335                                   


Chain F from PDB  Type:PROTEIN  Length:347
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:351
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
          AROG_YEAST     20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofrf_ F: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ofrF00 F:20-370 Aldolase class I                                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeeee..hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.......--................hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhhh..eeeee.....eeeeee.....eeeeeee.......hhhhhhhhhh........eeeeeeee....hhhhhhhhhhhhhhhhhh....eeeeeee...........--................hhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: F:20-370 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                      Transcript 1
                1ofr F   20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPR--VGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIP--GKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
                                    29        39        49        59        69        79        89        99       109    |  119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       | -|      339       349       359       369 
                                                                                                                        114  |                                                                                                                                                                                                               327  |                                        
                                                                                                                           117                                                                                                                                                                                                                  330                                        


Chain G from PDB  Type:PROTEIN  Length:345
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:352
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368  
          AROG_YEAST     19 AEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofrg_ G: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1ofrG00 G:19-369 Aldolase class I                                                                                                                                                                                                                                                                                                                              - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee......----...............hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhh...eeeee.....eeeeee.....eeeeeee.......hhhhhhhhhhhh......eeeeeeee......hhhhhhhhhhhhhhhh....eeeeeee........-....--..............hhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: G:19-1002 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                      Transcript 1
                1ofr G   19 AEEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKP----GWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQ-IPAE--AGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKF 1002
                                    28        38        48        58        68        78        88        98       108    |  118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298       308       318     | 328|  |   338       348       358       368||
                                                                                                                        113  118                                                                                                                                                                                                           324 |  |  |                                  369|
                                                                                                                                                                                                                                                                                                                                             326  |  |                                  1002
                                                                                                                                                                                                                                                                                                                                                329  |                                      
                                                                                                                                                                                                                                                                                                                                                   332                                      


Chain H from PDB  Type:PROTEIN  Length:348
 aligned with AROG_YEAST | P32449 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:351
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369 
          AROG_YEAST     20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPAEGKAGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKK  370
               SCOP domains d1ofrh_ H: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 1ofrH00 H:20-369 Aldolase class I                                                                                                                                                                                                                                                                                                                             - CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.....eeeeee.....hhhhhhhhhhhhhhhhhhh...eeeeee.........................hhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhh.eeee......hhhhhhhhh.....eeee......hhhhhhhhhhhh...eeeee.....eeeeee.....eeeee.........hhhhhhhhhhhh......eeee.hhhhh....hhhhhhhhhhhhhhh.....eeeeeee............---..............hhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.1  PDB: H:20-1002 (gaps) UniProt: 1-370 [INCOMPLETE]                                                                                                                                                                                                                                                                                                     Transcript 1
                1ofr H   20 EEDVRILGYDPLASPALLQVQIPATPTSLETAKRGRREAIDIITGKDDRVLVIVGPCSIHDLEAAQEYALRLKKLSDELKGDLSIIMRAYLEKPRTTVGWKGLINDPDVNNTFNINKGLQSARQLFVNLTNIGLPIGSEMLDTISPQYLADLVSFGAIGARTTESQLHRELASGLSFPVGFKNGTDGTLNVAVDACQAAAHSHHFMGVTKHGVAAITTTKGNEHCFVILRGGKKGTNYDAKSVAEAKAQLPAGSNGLMIDYSHGNSNKDFRNQPKVNDVVCEQIANGENAITGVMIESNINEGNQGIPA---AGLKYGVSITDACIGWETTEDVLRKLAAAVRQRREVNKF 1002
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319        |-  |    339       349       359       369|
                                                                                                                                                                                                                                                                                                                                              328 332                                  369|
                                                                                                                                                                                                                                                                                                                                                                                       1002
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: Alpha-Beta Barrel (2994)
(-)
Topology: TIM Barrel (2806)
(-)
Homologous Superfamily: Aldolase class I (887)
(-)
Baker's yeast (Saccharomyces cerevisiae) (49)
1a1ofrE00E:20-370
1b1ofrG00G:19-369
1c1ofrF00F:20-370
1d1ofrH00H:20-369
1e1ofrB00B:19-370
1f1ofrC00C:20-370
1g1ofrA00A:20-370
1h1ofrD00D:18-370

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1OFR)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (AROG_YEAST | P32449)
molecular function
    GO:0003849    3-deoxy-7-phosphoheptulonate synthase activity    Catalysis of the reaction: D-erythrose 4-phosphate + H(2)O + phosphoenolpyruvate = 7-phospho-2-dehydro-3-deoxy-D-arabino-heptonate + phosphate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0009073    aromatic amino acid family biosynthetic process    The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
    GO:0009058    biosynthetic process    The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0009423    chorismate biosynthetic process    The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.

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  1ofr
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  4.1.2.15
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AROG_YEAST | P32449: 1hfb 1oab 1of6 1of8 1ofa 1ofb 1ofo 1ofp 1ofq 1og0

(-) Related Entries Specified in the PDB File

1hfb CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH PHOSPHOENOLPYRUVATE
1oab CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH PHOSPHOENOLPYRUVATE AND MANGANESE(II)
1of6 CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE COMPLEXED WITH TYROSINE AND MANGANESE
1of8 DOUBLE COMPLEX OF THE TYROSINE SENSITIVE DAHP SYNTHASE FROM S. CEREVISIAE WITH CO2 +, PEP AND THE E4P ANALOGOUE G3P
1ofa CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH PHOSPHOENOLPYRUVATE AND COBALT(II)
1ofb CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH MANGANESE(II)
1ofo CRYSTAL STRUCTURE OF THE TYROSINE REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH COBALT(II) AND 2- PHOSPHOGLYCOLATE
1ofp CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE
1ofq CRYSTAL STRUCTURE OF THE TYROSINNE-REGULATED 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH MANGANESE(II)