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(-) Description

Title :  TRYPAREDOXIN II FROM C.FASCICULATA SOLVED BY MR
 
Authors :  G. A. Leonard, E. Micossi, W. N. Hunter
Date :  07 Feb 03  (Deposition) - 20 Mar 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Electron Transport, Tryparedoxin Ii (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Alphey, M. Gabrielsen, E. Micossi, G. A. Leonard, S. M. Mcsweeney, R. B. G. Ravelli, E. Tetaud, A. H. Fairlamb, C. S. Bond, W. N. Hunter
Tryparedoxins From Crithidia Fasciculata And Trypanosoma Brucei: Photoreduction Of The Redox Disulfide Using Synchrotron Radiation And Evidence For A Conformational Switch Implicated In Function
J. Biol. Chem. V. 278 25919 2003
PubMed-ID: 12707277  |  Reference-DOI: 10.1074/JBC.M301526200

(-) Compounds

Molecule 1 - TRYPAREDOXIN II
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 16-165
    Organism Scientific: CRITHIDIA FASCICULATA
    Organism Taxid: 5656
 
Molecule 2 - TRYPAREDOXIN II
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET15B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 16-165
    Organism Scientific: CRITHIDIA FASCICULATA
    Organism Taxid: 5656

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1OC9)

(-) Sites  (0, 0)

(no "Site" information available for 1OC9)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1OC9)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Ile A:125 -Pro A:126
2Phe A:156 -Pro A:157
3Ile B:125 -Pro B:126
4Phe B:156 -Pro B:157

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1OC9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1OC9)

(-) Exons   (0, 0)

(no "Exon" information available for 1OC9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:151
 aligned with O77093_CRIFA | O77093 from UniProtKB/TrEMBL  Length:165

    Alignment length:151
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164 
         O77093_CRIFA    15 HMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPNVEAKK 165
               SCOP domains d1oc9a_ A: Tryparedoxin II                                                                                                                              SCOP domains
               CATH domains 1oc9A00 A:15-165 Glutaredoxin                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh......eeee..eeeee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhh...ee....hhhhhhhhhhhh......eeeeee.....eee.hhhhhhhhh.........hhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oc9 A  15 HMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAESKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPNVEAKK 165
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164 


Chain B from PDB  Type:PROTEIN  Length:148
 aligned with O77093_CRIFA | O77093 from UniProtKB/TrEMBL  Length:165

    Alignment length:148
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154        
         O77093_CRIFA    15 HMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPNVE 162
               SCOP domains d1oc9b_ B: Tryparedoxin II                                                                                                                           SCOP domains
               CATH domains 1oc9B00 B:15-162 Glutaredoxin                                                                                                                        CATH domains
           Pfam domains (1) -----------------------------Thioredoxin_8-1oc9B01 B:44-138                                                                 ------------------------ Pfam domains (1)
           Pfam domains (2) -----------------------------Thioredoxin_8-1oc9B02 B:44-138                                                                 ------------------------ Pfam domains (2)
         Sec.struct. author .hhhhhh......eeee.....ee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhh....ee....hhhhhhhhhhhh......eeeeee.....eee.hhhhhhhhh............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1oc9 B  15 HMSGLKKFFPYSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPCRAFTPQLIDFYKAHAEKKNFEVMLISWDESAEDFKDYYAKMPWLALPFEDRKGMEFLTTGFDVKSIPTLVGVEADSGNIITTQARTMVVKDPEAKDFPWPNVE 162
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1OC9)

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  Sites
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  Cis Peptide Bonds
    Ile A:125 - Pro A:126   [ RasMol ]  
    Ile B:125 - Pro B:126   [ RasMol ]  
    Phe A:156 - Pro A:157   [ RasMol ]  
    Phe B:156 - Pro B:157   [ RasMol ]  
 

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  1oc9
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  O77093_CRIFA | O77093
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        O77093_CRIFA | O77093: 1fg4 1i5g 1o6j 1o81 1oc8

(-) Related Entries Specified in the PDB File

1fg4 STRUCTURE OF TRYPAREDOXIN II
1i5g TRYPAREDOXIN II COMPLEXED WITH GLUTATHIONYLSPERMIDINE
1o6j TRYPAREDOXIN II FROM C.FASCICULATA SOLVED BY SULPHUR PHASING
1o81 TRYPAREDOXIN II FROM C.FASCICULATA SOLVED BY SULPHUR PHASING
1oc8 TRYPAREDOXIN II FROM C.FASCICULATA SOLVED BY MR