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(-) Description

Title :  CRYSTAL STRUCTURE OF THE Y42F MUTANT OF MANGANESE CATALASE FROM LACTOBACILLUS PLANTARUM AT 1.33A RESOLUTION
 
Authors :  V. V. Barynin, M. M. Whittaker, J. W. Whittaker
Date :  13 Dec 02  (Deposition) - 18 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.33
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F
Keywords :  Oxidoreductase, Hexamer, Dimanganese Catalase, Metalloenzyme, Preoxidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. M. Whittaker, V. V. Barynin, T. Igarashi, J. W. Whittaker
Outer Sphere Mutagenesis Of Lactobacillus Plantarum Manganese Catalase Disrupts The Cluster Core. Mechanistic Implications.
Eur. J. Biochem. V. 270 1102 2003
PubMed-ID: 12631270  |  Reference-DOI: 10.1046/J.1432-1033.2003.03459.X
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PSEUDOCATALASE
    Atcc: 14431
    Chains: A, B, C, D, E, F
    EC Number: 1.11.1.6
    Engineered: YES
    Expression System: LACTOBACILLUS PLANTARUM
    Expression System Plasmid: PVMG36PSLPA-LPC
    Expression System Strain: KAT- L.PLANTARUM (NCDO 1193)
    Expression System Taxid: 1590
    Mutation: YES
    Organism Scientific: LACTOBACILLUS PLANTARUM
    Organism Taxid: 1590
    Synonym: MANGANESE-CONTAINING CATALASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric/Biological Unit : ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 31)

Asymmetric/Biological Unit (5, 31)
No.NameCountTypeFull Name
1CA6Ligand/IonCALCIUM ION
2MES5Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3MN312Ligand/IonMANGANESE (III) ION
4NA2Ligand/IonSODIUM ION
5O6Ligand/IonOXYGEN ATOM

(-) Sites  (31, 31)

Asymmetric Unit (31, 31)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASP A:57 , ASP A:61 , ASN F:218 , SER F:220 , GLY F:222 , HOH F:2198BINDING SITE FOR RESIDUE CA A 269
02AC2SOFTWAREHOH A:2066 , HOH A:2102 , HOH A:2103 , LYS F:255 , GLY F:257 , HOH F:2230 , HOH F:2231BINDING SITE FOR RESIDUE NA A 400
03AC3SOFTWARELYS D:255 , GLY D:257 , HOH D:2098 , HOH D:2227 , HOH E:2073 , HOH E:2077 , HOH E:2117BINDING SITE FOR RESIDUE NA A 401
04AC4SOFTWAREASP B:57 , ASP B:61 , ASN C:218 , SER C:220 , GLY C:222 , HOH C:2197BINDING SITE FOR RESIDUE CA B 269
05AC5SOFTWAREASN B:218 , SER B:220 , GLY B:222 , HOH B:2194 , ASP C:57 , ASP C:61BINDING SITE FOR RESIDUE CA C 269
06AC6SOFTWAREASP D:57 , ASP D:61 , HOH D:2065 , ASN E:218 , SER E:220 , GLY E:222BINDING SITE FOR RESIDUE CA D 269
07AC7SOFTWAREASN D:218 , SER D:220 , GLY D:222 , HOH D:2192 , ASP E:57 , ASP E:61BINDING SITE FOR RESIDUE CA E 269
08AC8SOFTWAREASN A:218 , SER A:220 , GLY A:222 , ASP F:57 , ASP F:61 , HOH F:2067BINDING SITE FOR RESIDUE CA F 269
09AC9SOFTWAREGLU A:35 , GLU A:66 , HIS A:69 , MN3 A:268 , O A:270 , HOH A:2228 , HOH A:2229BINDING SITE FOR RESIDUE MN3 A 267
10BC1SOFTWAREGLU A:66 , ARG A:147 , GLU A:148 , HIS A:181 , MN3 A:267 , O A:270 , HOH A:2228BINDING SITE FOR RESIDUE MN3 A 268
11BC2SOFTWAREGLU A:66 , HIS A:69 , GLU A:148 , HIS A:181 , MN3 A:267 , MN3 A:268 , HOH A:2228 , HOH A:2229BINDING SITE FOR RESIDUE O A 270
12BC3SOFTWAREPRO A:259 , HOH A:2230 , HOH A:2231 , HOH A:2232 , HOH D:2177 , GLU F:89BINDING SITE FOR RESIDUE MES A 273
13BC4SOFTWAREGLU B:35 , GLU B:66 , HIS B:69 , MN3 B:268 , O B:270 , HOH B:2241 , HOH B:2242BINDING SITE FOR RESIDUE MN3 B 267
14BC5SOFTWAREGLU B:66 , ARG B:147 , GLU B:148 , HIS B:181 , MN3 B:267 , O B:270 , HOH B:2241BINDING SITE FOR RESIDUE MN3 B 268
15BC6SOFTWAREGLU B:66 , HIS B:69 , HIS B:181 , MN3 B:267 , MN3 B:268 , HOH B:2241 , HOH B:2242BINDING SITE FOR RESIDUE O B 270
16BC7SOFTWAREGLU C:35 , GLU C:66 , HIS C:69 , MN3 C:268 , O C:270 , HOH C:2241 , HOH C:2242BINDING SITE FOR RESIDUE MN3 C 267
17BC8SOFTWAREGLU C:66 , ARG C:147 , GLU C:148 , HIS C:181 , MN3 C:267 , O C:270 , HOH C:2241BINDING SITE FOR RESIDUE MN3 C 268
18BC9SOFTWAREGLU C:66 , HIS C:69 , GLU C:148 , HIS C:181 , MN3 C:267 , MN3 C:268 , HOH C:2241 , HOH C:2242BINDING SITE FOR RESIDUE O C 270
19CC1SOFTWAREGLU D:35 , GLU D:66 , HIS D:69 , MN3 D:268 , O D:270 , HOH D:2242 , HOH D:2243BINDING SITE FOR RESIDUE MN3 D 267
20CC2SOFTWAREGLU D:66 , ARG D:147 , GLU D:148 , HIS D:181 , MN3 D:267 , O D:270 , HOH D:2243BINDING SITE FOR RESIDUE MN3 D 268
21CC3SOFTWAREGLU D:66 , HIS D:69 , GLU D:148 , HIS D:181 , MN3 D:267 , MN3 D:268 , HOH D:2242 , HOH D:2243BINDING SITE FOR RESIDUE O D 270
22CC4SOFTWAREGLU E:35 , GLU E:66 , HIS E:69 , MN3 E:268 , O E:270 , HOH E:2245 , HOH E:2246BINDING SITE FOR RESIDUE MN3 E 267
23CC5SOFTWAREGLU E:66 , ARG E:147 , GLU E:148 , HIS E:181 , MN3 E:267 , O E:270 , HOH E:2245BINDING SITE FOR RESIDUE MN3 E 268
24CC6SOFTWAREGLU E:66 , HIS E:69 , GLU E:148 , HIS E:181 , MN3 E:267 , MN3 E:268 , HOH E:2245 , HOH E:2246BINDING SITE FOR RESIDUE O E 270
25CC7SOFTWAREHOH A:2134 , LYS E:92 , PRO E:259 , HOH E:2247 , HOH E:2248 , HOH F:2181BINDING SITE FOR RESIDUE MES E 273
26CC8SOFTWAREPRO D:14 , ARG D:16 , SER D:17 , TYR D:79 , GLU D:82 , ARG E:16 , SER E:17 , LYS E:255BINDING SITE FOR RESIDUE MES E 274
27CC9SOFTWAREGLU F:35 , GLU F:66 , HIS F:69 , MN3 F:268 , O F:270 , HOH F:2248 , HOH F:2249BINDING SITE FOR RESIDUE MN3 F 267
28DC1SOFTWAREGLU F:66 , ARG F:147 , GLU F:148 , HIS F:181 , MN3 F:267 , O F:270 , HOH F:2249BINDING SITE FOR RESIDUE MN3 F 268
29DC2SOFTWAREGLU F:66 , HIS F:69 , GLU F:148 , HIS F:181 , MN3 F:267 , MN3 F:268 , HOH F:2248 , HOH F:2249BINDING SITE FOR RESIDUE O F 270
30DC3SOFTWAREGLY A:250 , ILE A:251 , LYS F:7 , HOH F:2250BINDING SITE FOR RESIDUE MES F 273
31DC4SOFTWAREGLU B:89 , ARG C:260 , SER F:160 , ARG F:168 , HOH F:2143 , HOH F:2251BINDING SITE FOR RESIDUE MES F 274

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1O9I)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Val A:200 -Pro A:201
2Val B:200 -Pro B:201
3Val C:200 -Pro C:201
4Val D:200 -Pro D:201
5Val E:200 -Pro E:201
6Val F:200 -Pro F:201

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1O9I)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1O9I)

(-) Exons   (0, 0)

(no "Exon" information available for 1O9I)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9ia_ A: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iA01 A:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iA02 A:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i A   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain B from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9ib_ B: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iB01 B:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iB02 B:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i B   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain C from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9ic_ C: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iC01 C:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iC02 C:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i C   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain D from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9id_ D: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iD01 D:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iD02 D:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i D   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain E from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9ie_ E: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iE01 E:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iE02 E:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i E   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      


Chain F from PDB  Type:PROTEIN  Length:266
 aligned with MCAT_LACPN | P60355 from UniProtKB/Swiss-Prot  Length:266

    Alignment length:266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260      
           MCAT_LACPN     1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSYLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
               SCOP domains d1o9if_ F: Manganese catalase (T-catalase)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1o9iF01 F:1-203  [code=1.20.1260.10, no name defined]                                                                                                                                                      1o9iF02 F:204-266 manganese catalase, domain 2, chain A         CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.............hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhhhhhh................hhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh.eee.....hhhhhhh..........eee...............hhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o9i F   1 MFKHTRKLQYNAKPDRSDPIMARRLQESLGGQWGETTGMMSFLSQGWASTGAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMAGMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMTEDEGVRDMLKFLLARETQHQLQFMKAQEELEEKYGIIVPGDMKEIEHSEFSHVLMNFSDGDGSKAFEGQVAKDGEKFTYQENPEAMGGIPHIKPGDPRLHNHQG 266
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1O9I)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (MCAT_LACPN | P60355)
molecular function
    GO:0004096    catalase activity    Catalysis of the reaction: 2 hydrogen peroxide = O2 + 2 H2O.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0004601    peroxidase activity    Catalysis of the reaction: donor + hydrogen peroxide = oxidized donor + 2 H2O.
biological process
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

 Visualization

(-) Interactive Views

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MCAT_LACPN | P60355: 1jku 1jkv

(-) Related Entries Specified in the PDB File

1jkv MANGANESE CATALASE FROM LACTOBACILLUS PLANTARUM COMPLEXED WITH AZIDE
1jku L.PLANTARUM MANGANESE CATALASE