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(-) Description

Title :  METAL NANOCLUSTERS BOUND TO THE FERRIC BINDING PROTEIN FROM NEISSERIA GONORRHOEAE.
 
Authors :  D. Alexeev, H. Zu, M. Guo, W. Zhong, D. J. B. Hunter, W. Yang, D. J. Campopiano, P. J. Sadler
Date :  12 Nov 02  (Deposition) - 27 Feb 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Biol. Unit 9:  I  (1x)
Keywords :  Metal-Binding Protein, Periplasmic Ferric Binding Protein, Hafnium, Metal-Oxo Cluster (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Alexeev, H. Zhu, M. Guo, W. Zhong, D. J. B. Hunter, W. Yang, D. J. Campopiano, P. J. Sadler
A Novel Protein-Mineral Interface
Nat. Struct. Biol. V. 10 297 2003
PubMed-ID: 12598891  |  Reference-DOI: 10.1038/NSB903

(-) Compounds

Molecule 1 - IRON BINDING PROTEIN
    Chains: A, B, C, D, E, F, G, H, I
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Cell Line: TOP10
    Expression System Plasmid: PTRC99A/FBP/NG
    Expression System Taxid: 562
    Organism Scientific: NEISSERIA GONORRHOEAE
    Organism Taxid: 485
    Strain: FBPA

 Structural Features

(-) Chains, Units

  123456789
Asymmetric Unit : ABCDEFGHI
Biological Unit 1 (1x): A        
Biological Unit 2 (1x):  B       
Biological Unit 3 (1x):   C      
Biological Unit 4 (1x):    D     
Biological Unit 5 (1x):     E    
Biological Unit 6 (1x):      F   
Biological Unit 7 (1x):       G  
Biological Unit 8 (1x):        H 
Biological Unit 9 (1x):         I

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1HF31Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF55Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF3Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF51Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF51Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF51Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 4 (1, 1)
No.NameCountTypeFull Name
1HF31Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF5-1Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 5 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF51Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF51Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF-1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 7 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF5-1Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 8 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF5-1Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
Biological Unit 9 (1, 1)
No.NameCountTypeFull Name
1HF3-1Ligand/IonSEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2HF5-1Ligand/IonSEE REMARK 600HF OXO CLUSTER HF5
3PHF1Ligand/IonSEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:34 , ARG A:101 , SER A:139 , ALA A:141 , ASN A:175 , ASN A:193 , TYR A:195 , TYR A:196 , ARG A:262 , HOH A:2252 , HOH A:2253 , HOH A:2254 , HOH A:2256BINDING SITE FOR RESIDUE HF5 A1310
2AC2SOFTWARESER B:139 , GLY B:140 , ALA B:141 , ASN B:175 , ASN B:193 , TYR B:195 , TYR B:196 , ARG B:262 , HOH B:2213 , HOH B:2214 , HOH B:2216 , HOH B:2217 , HOH B:2218 , HOH B:2219 , HOH B:2220BINDING SITE FOR RESIDUE HF5 B1310
3AC3SOFTWARELYS C:34 , SER C:139 , GLY C:140 , ALA C:141 , ASN C:175 , ASN C:193 , TYR C:195 , TYR C:196 , ARG C:262 , HOH C:2024 , HOH C:2218 , HOH C:2220 , HOH C:2222 , HOH C:2223BINDING SITE FOR RESIDUE HF5 C1310
4AC4SOFTWARESER D:139 , GLY D:140 , ALA D:141 , ASN D:175 , ASN D:193 , TYR D:195 , TYR D:196 , ARG D:262 , HOH D:2207 , HOH D:2209 , HOH D:2210BINDING SITE FOR RESIDUE HF3 D1310
5AC5SOFTWARESER E:139 , GLY E:140 , ALA E:141 , ASN E:175 , ASN E:193 , TYR E:195 , TYR E:196 , ARG E:262 , HOH E:2243BINDING SITE FOR RESIDUE HF5 E1310
6AC6SOFTWARESER F:139 , GLY F:140 , ALA F:141 , LYS F:174 , ASN F:175 , ASN F:193 , TYR F:195 , TYR F:196 , ARG F:262 , HOH F:2225 , HOH F:2226 , HOH F:2227BINDING SITE FOR RESIDUE HF5 F1310
7AC7SOFTWARELYS G:34 , ARG G:101 , SER G:139 , GLY G:140 , ALA G:141 , LYS G:174 , ASN G:175 , SER G:176 , ASN G:193 , TYR G:195 , TYR G:196 , ARG G:262 , HOH G:2028 , HOH G:2211 , HOH G:2212BINDING SITE FOR RESIDUE PHF G1310
8AC8SOFTWARELYS H:34 , ARG H:101 , SER H:139 , GLY H:140 , ALA H:141 , LYS H:174 , ASN H:175 , SER H:176 , TYR H:195 , TYR H:196 , ARG H:262 , HOH H:2185 , HOH H:2187BINDING SITE FOR RESIDUE PHF H1310
9AC9SOFTWAREARG D:48 , HIS I:9 , ARG I:101 , SER I:139 , GLY I:140 , ALA I:141 , LYS I:174 , ASN I:175 , SER I:176 , ASN I:193 , TYR I:195 , TYR I:196 , ARG I:262 , HOH I:2192 , HOH I:2193 , HOH I:2194 , HOH I:2196 , HOH I:2197BINDING SITE FOR RESIDUE PHF I1310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1O7T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1O7T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1O7T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1O7T)

(-) Exons   (0, 0)

(no "Exon" information available for 1O7T)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7ta_ A: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tA02 A:1-101,A:226-277 Periplasmic binding protein-like II                                        1o7tA01 A:102-225,A:278-309 Periplasmic binding protein-like II                                                             1o7tA02 A:1-101,A:226-277                           1o7tA01 A:102-225,A:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh......hhhhhhhhh............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhh..........hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....ee............hhhhhh.......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t A   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain B from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7tb_ B: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tB02 B:1-101,B:226-277 Periplasmic binding protein-like II                                        1o7tB01 B:102-225,B:278-309 Periplasmic binding protein-like II                                                             1o7tB02 B:1-101,B:226-277                           1o7tB01 B:102-225,B:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhh......eeee..hhhhhhhhhh......hhhhhhh..............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh..........hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....ee............hhhhhh.......hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t B   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain C from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7tc_ C: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tC02 C:1-101,C:226-277 Periplasmic binding protein-like II                                        1o7tC01 C:102-225,C:278-309 Periplasmic binding protein-like II                                                             1o7tC02 C:1-101,C:226-277                           1o7tC01 C:102-225,C:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh......hhhhhh...............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh..........hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh....ee............hhhhhh.......hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t C   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain D from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7td_ D: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tD02 D:1-101,D:226-277 Periplasmic binding protein-like II                                        1o7tD01 D:102-225,D:278-309 Periplasmic binding protein-like II                                                             1o7tD02 D:1-101,D:226-277                           1o7tD01 D:102-225,D:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhh...eeee..hhhhhhhhhh..ee..hhhhhhh..............eeeeeeeeeeeee...........hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.eeee.....hhhh.eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh....ee............hhhhhh.......hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t D   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain E from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7te_ E: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tE02 E:1-101,E:226-277 Periplasmic binding protein-like II                                        1o7tE01 E:102-225,E:278-309 Periplasmic binding protein-like II                                                             1o7tE02 E:1-101,E:226-277                           1o7tE01 E:102-225,E:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh......hhhhhhhhh............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.eeee.....hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....ee............hhhhhh.......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t E   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain F from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7tf_ F: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tF02 F:1-101,F:226-277 Periplasmic binding protein-like II                                        1o7tF01 F:102-225,F:278-309 Periplasmic binding protein-like II                                                             1o7tF02 F:1-101,F:226-277                           1o7tF01 F:102-225,F:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh......hhhhhhhhh............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhh.....eeeeehhhhhhhhhhhhhhhh.eeee.....hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....ee............hhhhhh.......hhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t F   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain G from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7tg_ G: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tG02 G:1-101,G:226-277 Periplasmic binding protein-like II                                        1o7tG01 G:102-225,G:278-309 Periplasmic binding protein-like II                                                             1o7tG02 G:1-101,G:226-277                           1o7tG01 G:102-225,G:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh..ee..hhhhhhhhh............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.eeee.....hhhh.eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhh.....ee............hhhhhh.......hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t G   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain H from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7th_ H: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tH02 H:1-101,H:226-277 Periplasmic binding protein-like II                                        1o7tH01 H:102-225,H:278-309 Periplasmic binding protein-like II                                                             1o7tH02 H:1-101,H:226-277                           1o7tH01 H:102-225,H:278-309      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhhhh...eeee..hhhhhhhhh.......hhhhhh...............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhh.....eeee.....hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh....ee............hhhhhh.......hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t H   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300         


Chain I from PDB  Type:PROTEIN  Length:309
 aligned with Q50964_NEIGO | Q50964 from UniProtKB/TrEMBL  Length:331

    Alignment length:309
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322         
         Q50964_NEIGO    23 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEIDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 331
               SCOP domains d1o7ti_ I: Ferric-binding protein FbpA                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains 1o7tI02 I:1-101,I:226-277 Periplasmic binding protein-like II                                        1o7tI01 I:102-225,I:278-309 Periplasmic binding protein-like II                                                             1o7tI02 I:1-101,I:226-277                           1o7tI01 I:102-225,I:278-309      CATH domains
           Pfam domains (1) -----SBP_bac_1-1o7tI01 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (1)
           Pfam domains (2) -----SBP_bac_1-1o7tI02 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (2)
           Pfam domains (3) -----SBP_bac_1-1o7tI03 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (3)
           Pfam domains (4) -----SBP_bac_1-1o7tI04 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (4)
           Pfam domains (5) -----SBP_bac_1-1o7tI05 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (5)
           Pfam domains (6) -----SBP_bac_1-1o7tI06 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (6)
           Pfam domains (7) -----SBP_bac_1-1o7tI07 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (7)
           Pfam domains (8) -----SBP_bac_1-1o7tI08 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (8)
           Pfam domains (9) -----SBP_bac_1-1o7tI09 I:6-256                                                                                                                                                                                                                                  ----------------------------------------------------- Pfam domains (9)
         Sec.struct. author .eeeee..hhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhhhh...eeee.hhhhhhhhhhh......hhhhhhhhh............eeeeeeeeeeeee....hhhhh..hhhhhhhhhhh..eee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.eeee.....hhhh.eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhh.....ee.........................hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1o7t I   1 DITVYNGQHKEAAQAVADAFTRATGIKVKLNSAKGDQLAGQIKEEGSRSPADVFYSEQIPALATLSAANLLEPLPASTINETRGKGVPVAAKKDWVALSGRSRVVVYDTRKLSEKDLEKSVLNYATPKWKNRIGYVPTSGAFLEQIVAIVKLKGEAAALKWLKGLKEYGKPYAKNSVALQAVENGEVDAALINNYYWHAFAREKGVQNVHTRLNFVRHRDPGALVTYSGAAVLKSSQNKDEAKKFVAFLAGKEGQRALTAVRAEYPLNPHVVSTFNLEPIAKLEAPQVSATTVSEKEHATRLLEQAGMK 309
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 9)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 18)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: D-Maltodextrin-Binding Protein; domain 2 (600)
(-)
Homologous Superfamily: Periplasmic binding protein-like II (486)
(-)
Neisseria gonorrhoeae. Organism_taxid: 485. Strain: fbpa. (1)
1a1o7tA02A:1-101,A:226-277
1b1o7tB02B:1-101,B:226-277
1c1o7tB01B:102-225,B:278-309
1d1o7tC01C:102-225,C:278-309
1e1o7tD01D:102-225,D:278-309
1f1o7tE01E:102-225,E:278-309
1g1o7tF01F:102-225,F:278-309
1h1o7tG01G:102-225,G:278-309
1i1o7tH01H:102-225,H:278-309
1j1o7tI01I:102-225,I:278-309
1k1o7tC02C:1-101,C:226-277
1l1o7tD02D:1-101,D:226-277
1m1o7tE02E:1-101,E:226-277
1n1o7tF02F:1-101,F:226-277
1o1o7tG02G:1-101,G:226-277
1p1o7tH02H:1-101,H:226-277
1q1o7tI02I:1-101,I:226-277
1r1o7tA01A:102-225,A:278-309

(-) Pfam Domains  (1, 9)

Asymmetric Unit
(-)
Clan: PBP (391)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I   (Q50964_NEIGO | Q50964)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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  1o7t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q50964_NEIGO | Q50964: 3tyh
UniProtKB/TrEMBL
        Q50964_NEIGO | Q50964: 1d9y

(-) Related Entries Specified in the PDB File

1d9y NEISSERIA GONORRHOEAE FERRIC BINDING PROTEIN