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1O7T
Biol. Unit 1
Info
Asym.Unit (479 KB)
Biol.Unit 1 (60 KB)
Biol.Unit 2 (59 KB)
Biol.Unit 3 (59 KB)
Biol.Unit 4 (59 KB)
Biol.Unit 5 (60 KB)
Biol.Unit 6 (59 KB)
Biol.Unit 7 (59 KB)
Biol.Unit 8 (59 KB)
Biol.Unit 9 (59 KB)
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(1)
Title
:
METAL NANOCLUSTERS BOUND TO THE FERRIC BINDING PROTEIN FROM NEISSERIA GONORRHOEAE.
Authors
:
D. Alexeev, H. Zu, M. Guo, W. Zhong, D. J. B. Hunter, W. Yang, D. J. Campopiano, P. J. Sadler
Date
:
12 Nov 02 (Deposition) - 27 Feb 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.65
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Biol. Unit 5: E (1x)
Biol. Unit 6: F (1x)
Biol. Unit 7: G (1x)
Biol. Unit 8: H (1x)
Biol. Unit 9: I (1x)
Keywords
:
Metal-Binding Protein, Periplasmic Ferric Binding Protein, Hafnium, Metal-Oxo Cluster
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. Alexeev, H. Zhu, M. Guo, W. Zhong, D. J. B. Hunter, W. Yang, D. J. Campopiano, P. J. Sadler
A Novel Protein-Mineral Interface
Nat. Struct. Biol. V. 10 297 2003
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: SEE REMARK 600SMALLEST HF-OXO-PHOS... (HF3a)
2a: SEE REMARK 600HF OXO CLUSTER HF5 (HF5a)
2b: SEE REMARK 600HF OXO CLUSTER HF5 (HF5b)
2c: SEE REMARK 600HF OXO CLUSTER HF5 (HF5c)
2d: SEE REMARK 600HF OXO CLUSTER HF5 (HF5d)
2e: SEE REMARK 600HF OXO CLUSTER HF5 (HF5e)
3a: SEE REMARK 600HF-OXO-PHOSPHATE CLU... (PHFa)
3b: SEE REMARK 600HF-OXO-PHOSPHATE CLU... (PHFb)
3c: SEE REMARK 600HF-OXO-PHOSPHATE CLU... (PHFc)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
HF3
-1
Ligand/Ion
SEE REMARK 600SMALLEST HF-OXO-PHOSPHATE CLUSTER HF3
2
HF5
1
Ligand/Ion
SEE REMARK 600HF OXO CLUSTER HF5
3
PHF
-1
Ligand/Ion
SEE REMARK 600HF-OXO-PHOSPHATE CLUSTER PHF
[
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Sites
(1, 1)
Info
All Sites
1: AC1 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS A:34 , ARG A:101 , SER A:139 , ALA A:141 , ASN A:175 , ASN A:193 , TYR A:195 , TYR A:196 , ARG A:262 , HOH A:2252 , HOH A:2253 , HOH A:2254 , HOH A:2256
BINDING SITE FOR RESIDUE HF5 A1310
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 9)
Info
All SCOP Domains
1a: SCOP_d1o7ta_ (A:)
1b: SCOP_d1o7tb_ (B:)
1c: SCOP_d1o7tc_ (C:)
1d: SCOP_d1o7td_ (D:)
1e: SCOP_d1o7te_ (E:)
1f: SCOP_d1o7tf_ (F:)
1g: SCOP_d1o7tg_ (G:)
1h: SCOP_d1o7th_ (H:)
1i: SCOP_d1o7ti_ (I:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like II
(813)
Superfamily
:
Periplasmic binding protein-like II
(813)
Family
:
Phosphate binding protein-like
(463)
Protein domain
:
Ferric-binding protein FbpA
(25)
Neisseria gonorrhoeae [TaxId: 485]
(5)
1a
d1o7ta_
A:
1b
d1o7tb_
B:
1c
d1o7tc_
C:
1d
d1o7td_
D:
1e
d1o7te_
E:
1f
d1o7tf_
F:
1g
d1o7tg_
G:
1h
d1o7th_
H:
1i
d1o7ti_
I:
[
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CATH Domains
(1, 18)
Info
all CATH domains
1a: CATH_1o7tA02 (A:1-101,A:226-277)
1b: CATH_1o7tB02 (B:1-101,B:226-277)
1c: CATH_1o7tB01 (B:102-225,B:278-309)
1d: CATH_1o7tC01 (C:102-225,C:278-309)
1e: CATH_1o7tD01 (D:102-225,D:278-309)
1f: CATH_1o7tE01 (E:102-225,E:278-309)
1g: CATH_1o7tF01 (F:102-225,F:278-309)
1h: CATH_1o7tG01 (G:102-225,G:278-309)
1i: CATH_1o7tH01 (H:102-225,H:278-309)
1j: CATH_1o7tI01 (I:102-225,I:278-309)
1k: CATH_1o7tC02 (C:1-101,C:226-277)
1l: CATH_1o7tD02 (D:1-101,D:226-277)
1m: CATH_1o7tE02 (E:1-101,E:226-277)
1n: CATH_1o7tF02 (F:1-101,F:226-277)
1o: CATH_1o7tG02 (G:1-101,G:226-277)
1p: CATH_1o7tH02 (H:1-101,H:226-277)
1q: CATH_1o7tI02 (I:1-101,I:226-277)
1r: CATH_1o7tA01 (A:102-225,A:278-309)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
D-Maltodextrin-Binding Protein; domain 2
(600)
Homologous Superfamily
:
Periplasmic binding protein-like II
(486)
Neisseria gonorrhoeae. Organism_taxid: 485. Strain: fbpa.
(1)
1a
1o7tA02
A:1-101,A:226-277
1b
1o7tB02
B:1-101,B:226-277
1c
1o7tB01
B:102-225,B:278-309
1d
1o7tC01
C:102-225,C:278-309
1e
1o7tD01
D:102-225,D:278-309
1f
1o7tE01
E:102-225,E:278-309
1g
1o7tF01
F:102-225,F:278-309
1h
1o7tG01
G:102-225,G:278-309
1i
1o7tH01
H:102-225,H:278-309
1j
1o7tI01
I:102-225,I:278-309
1k
1o7tC02
C:1-101,C:226-277
1l
1o7tD02
D:1-101,D:226-277
1m
1o7tE02
E:1-101,E:226-277
1n
1o7tF02
F:1-101,F:226-277
1o
1o7tG02
G:1-101,G:226-277
1p
1o7tH02
H:1-101,H:226-277
1q
1o7tI02
I:1-101,I:226-277
1r
1o7tA01
A:102-225,A:278-309
[
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Pfam Domains
(1, 9)
Info
all PFAM domains
1a: PFAM_SBP_bac_1_1o7tI01 (I:6-256)
1b: PFAM_SBP_bac_1_1o7tI02 (I:6-256)
1c: PFAM_SBP_bac_1_1o7tI03 (I:6-256)
1d: PFAM_SBP_bac_1_1o7tI04 (I:6-256)
1e: PFAM_SBP_bac_1_1o7tI05 (I:6-256)
1f: PFAM_SBP_bac_1_1o7tI06 (I:6-256)
1g: PFAM_SBP_bac_1_1o7tI07 (I:6-256)
1h: PFAM_SBP_bac_1_1o7tI08 (I:6-256)
1i: PFAM_SBP_bac_1_1o7tI09 (I:6-256)
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)
Clan
:
PBP
(391)
Family
:
SBP_bac_1
(83)
Neisseria gonorrhoeae
(3)
1a
SBP_bac_1-1o7tI01
I:6-256
1b
SBP_bac_1-1o7tI02
I:6-256
1c
SBP_bac_1-1o7tI03
I:6-256
1d
SBP_bac_1-1o7tI04
I:6-256
1e
SBP_bac_1-1o7tI05
I:6-256
1f
SBP_bac_1-1o7tI06
I:6-256
1g
SBP_bac_1-1o7tI07
I:6-256
1h
SBP_bac_1-1o7tI08
I:6-256
1i
SBP_bac_1-1o7tI09
I:6-256
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Asym.Unit (479 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
Biol.Unit 2 (59 KB)
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