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Title :   SOLUTION STRUCTURE OF THE 30S RIBOSOMAL PROTEIN S28E FROM PYROCOCCUS HORIKOSHII. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET JR19.

Authors :   J. M. Aramini, J. R. Cort, Y. J. Huang, R. Xiao, T. B. Acton, C. K. Ho, L. - Y. Shih, M. A. Kennedy, G. T. Montelione, Northeast Structural Genomics Consortium (Nesg)

Date :   11 Feb 03 (Deposition) - 02 Sep 03 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (10x)

Keywords :   Jr19, Nmr Structure, Autostructure, Ribosomal Protein, Northeast Structural Genomics Consortium, Psi, Protein Structure Initiative, Nesg, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Aramini, Y. J. Huang, J. R. Cort, S. Goldsmith-Fischman, R. Xiao, L. -Y. Shih, C. K. Ho, J. Liu, B. Rost, B. Honig, M. A. Kennedy, T. B. Acton, G. T. Montelione
Solution Nmr Structure Of The 30S Ribosomal Protein S28E From Pyrococcus Horikoshii.
Protein Sci. V. 12 2823 2003
PubMed-ID: 14627742 | Reference-DOI: 10.1110/PS.03359003
(for further references see the PDB file header)

Compounds

Structural Features

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (0, 0)

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PROSITE Motifs (1, 1)

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Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:71
 aligned with RS28_PYRHO | P61030 from UniProtKB/Swiss-Prot  Length:71

    Alignment length:71
                                    10        20        30        40        50        60        70 
            RS28_PYRHO    1 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR 71
               SCOP domains d1ny4a_ A: Ribosomal protein S28e                                       SCOP domains
               CATH domains 1ny4A00 A:1-71 Nucleic acid-binding proteins                            CATH domains
               Pfam domains Ribosomal_S28e-1ny4A01 A:1-68                                       --- Pfam domains
         Sec.struct. author .......eeeeeee.........eeeeeeee........eeeeeee.......eee............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------RIBOSOMAL---- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  1ny4 A  1 MAEDEGYPAEVIEIIGRTGTTGDVTQVKVRILEGRDKGRVIRRNVRGPVRVGDILILRETEREAREIKSRR 71
                                    10        20        30        40        50        60        70

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SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (5, 5)

NMR Structure(hide GO term definitions)

Chain A (RS28_PYRHO | P61030)

molecular function
	GO:0003735	structural constituent of ribosome	The action of a molecule that contributes to the structural integrity of the ribosome.
biological process
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0005840	ribosome	An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.

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