1NO5 - JenaLib

Title :   STRUCTURE OF HI0073 FROM HAEMOPHILUS INFLUENZAE, THE NUCLEOTIDE BINDING DOMAIN OF THE HI0073/HI0074 TWO PROTEIN NUCLEOTIDYL TRANSFERASE.

Authors :   C. Lehmann, S. Pullalarevu, A. Galkin, W. Krajewski, M. A. Willis, A. Ho O. Herzberg, Structure 2 Function Project (S2F)

Date :   15 Jan 03 (Deposition) - 16 Mar 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: A,B  (3x)
Biol. Unit 4: A (3x),B (3x)
Biol. Unit 5: A (1x),B (1x)
Biol. Unit 6: A (1x),B (1x)
Biol. Unit 7: A,B  (1x)

Keywords :   Hi0073, Hi0074, Structural Genomics, Nucleotidyl Transferase, Structure 2 Function Project, S2F, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Lehmann, S. Pullalarevu, W. Krajewski, M. A. Willis, A. Galkin, A. Howard, O. Herzberg
Structure Of Hi0073 From Haemophilus Influenzae, The Nucleotide-Binding Domain Of A Two-Protein Nucleotidyl Transferase
Proteins V. 60 807 2005
PubMed-ID: 16028221 | Reference-DOI: 10.1002/PROT.20586

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 12)

Asymmetric Unit (4, 12)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	1	Ligand/Ion	SODIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION
4	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 9)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	6	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (1, 3)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (1, 1)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	-1	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 7 (2, 3)

No.	Name	Count	Type	Full Name
1	GOL	1	Ligand/Ion	GLYCEROL
2	NA	-1	Ligand/Ion	SODIUM ION
3	SO4	2	Ligand/Ion	SULFATE ION
4	ZN	-1	Ligand/Ion	ZINC ION

Sites (12, 12)

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:46 , ASP A:48 , ZN A:511 , HOH A:1102 , HOH A:1103 , HOH A:1104 , HOH A:1105	BINDING SITE FOR RESIDUE ZN A 501
02	AC2	SOFTWARE	ASP A:46 , ASP A:48 , ASP A:79 , ZN A:501 , ZN A:531 , HOH A:1105 , ASP B:73	BINDING SITE FOR RESIDUE ZN A 511
03	AC3	SOFTWARE	ASP A:79 , HOH A:1269 , GLU B:12	BINDING SITE FOR RESIDUE ZN A 521
04	AC4	SOFTWARE	ZN A:511 , HOH A:1105	BINDING SITE FOR RESIDUE ZN A 531
05	AC5	SOFTWARE	GLU A:67 , GLU A:71 , ASP B:46 , ASP B:48 , ZN B:551 , HOH B:1106 , HOH B:1107	BINDING SITE FOR RESIDUE ZN B 541
06	AC6	SOFTWARE	GLU A:67 , ASP B:46 , ASP B:48 , ASP B:79 , ZN B:541 , HOH B:1108	BINDING SITE FOR RESIDUE ZN B 551
07	AC7	SOFTWARE	GLU A:88 , GLU A:92 , HOH A:1110 , ASP B:8	BINDING SITE FOR RESIDUE ZN A 561
08	AC8	SOFTWARE	GLU B:67 , GLU B:71 , SO4 B:601 , SO4 B:602	BINDING SITE FOR RESIDUE ZN B 571
09	AC9	SOFTWARE	LYS A:42 , LYS A:43 , GLU B:67 , GLU B:71 , ZN B:571 , SO4 B:602 , NA B:701	BINDING SITE FOR RESIDUE SO4 B 601
10	BC1	SOFTWARE	GLU B:67 , GLU B:71 , ASP B:89 , ZN B:571 , SO4 B:601 , NA B:701 , HOH B:1230	BINDING SITE FOR RESIDUE SO4 B 602
11	BC2	SOFTWARE	ASP B:89 , SO4 B:601 , SO4 B:602 , HOH B:1230	BINDING SITE FOR RESIDUE NA B 701
12	BC3	SOFTWARE	ALA A:84 , THR A:86 , SER A:87 , ARG A:91 , HOH A:1131	BINDING SITE FOR RESIDUE GOL A 801

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:100
 aligned with Y073_HAEIN | P43933 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:100
                                    15        25        35        45        55        65        75        85        95       105
           Y073_HAEIN     6 QLDIKSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEAFSESDLPWRVDLLDWATTSEDFREIIRKVYVVIQEKE 105
               SCOP domains d1no5a_ A: Hypothetical protein HI0073                                                               SCOP domains
               CATH domains 1no5A00 A:6-105 Beta Polymerase, domain 2                                                            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh...eeeeehhhh.........eeeeee.....hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhh.eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 1no5 A   6 QLDIKSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEAFSESDLPWRVDLLDWATTSEDFREIIRKVYVVIQEKE 105
                                    15        25        35        45        55        65        75        85        95       105

Chain B from PDB  Type:PROTEIN  Length:102
 aligned with Y073_HAEIN | P43933 from UniProtKB/Swiss-Prot  Length:114

    Alignment length:102
                                    13        23        33        43        53        63        73        83        93       103  
           Y073_HAEIN     4 FAQLDIKSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEAFSESDLPWRVDLLDWATTSEDFREIIRKVYVVIQEKE 105
               SCOP domains d1no5b_ B: Hypothetical protein HI0073                                                                 SCOP domains
               CATH domains 1no5B00 B:4-105 Beta Polymerase, domain 2                                                              CATH domains
           Pfam domains (1) ----------NTP_transf_2-1no5B01 B:14-105                                                                Pfam domains (1)
           Pfam domains (2) ----------NTP_transf_2-1no5B02 B:14-105                                                                Pfam domains (2)
         Sec.struct. author ......hhhhhhhhhhhhhhhh...eeeee.............eeeeee.....hhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhhhhh.eeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------ Transcript
                 1no5 B   4 FAQLDIKSEELAIVKTILQQLVPDYTVWAFGSRVKGKAKKYSDLDLAIISEEPLDFLARDRLKEAFSESDLPWRVDLLDWATTSEDFREIIRKVYVVIQEKE 105
                                    13        23        33        43        53        63        73        83        93       103

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (1, 1)

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