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1NO5
Biol. Unit 5
Info
Asym.Unit (48 KB)
Biol.Unit 1 (22 KB)
Biol.Unit 2 (22 KB)
Biol.Unit 3 (121 KB)
Biol.Unit 4 (121 KB)
Biol.Unit 5 (42 KB)
Biol.Unit 6 (42 KB)
Biol.Unit 7 (42 KB)
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(1)
Title
:
STRUCTURE OF HI0073 FROM HAEMOPHILUS INFLUENZAE, THE NUCLEOTIDE BINDING DOMAIN OF THE HI0073/HI0074 TWO PROTEIN NUCLEOTIDYL TRANSFERASE.
Authors
:
C. Lehmann, S. Pullalarevu, A. Galkin, W. Krajewski, M. A. Willis, A. Ho O. Herzberg, Structure 2 Function Project (S2F)
Date
:
15 Jan 03 (Deposition) - 16 Mar 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.80
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: A,B (3x)
Biol. Unit 4: A,B (3x)
Biol. Unit 5: A,B (1x)
Biol. Unit 6: A,B (1x)
Biol. Unit 7: A,B (1x)
Keywords
:
Hi0073, Hi0074, Structural Genomics, Nucleotidyl Transferase, Structure 2 Function Project, S2F, Unknown Function
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Lehmann, S. Pullalarevu, W. Krajewski, M. A. Willis, A. Galkin, A. Howard, O. Herzberg
Structure Of Hi0073 From Haemophilus Influenzae, The Nucleotide-Binding Domain Of A Two-Protein Nucleotidyl Transferase
Proteins V. 60 807 2005
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
2a: SODIUM ION (NAa)
3a: SULFATE ION (SO4a)
3b: SULFATE ION (SO4b)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
1
Ligand/Ion
GLYCEROL
2
NA
-1
Ligand/Ion
SODIUM ION
3
SO4
-1
Ligand/Ion
SULFATE ION
4
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(12, 12)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP A:46 , ASP A:48 , ZN A:511 , HOH A:1102 , HOH A:1103 , HOH A:1104 , HOH A:1105
BINDING SITE FOR RESIDUE ZN A 501
02
AC2
SOFTWARE
ASP A:46 , ASP A:48 , ASP A:79 , ZN A:501 , ZN A:531 , HOH A:1105 , ASP B:73
BINDING SITE FOR RESIDUE ZN A 511
03
AC3
SOFTWARE
ASP A:79 , HOH A:1269 , GLU B:12
BINDING SITE FOR RESIDUE ZN A 521
04
AC4
SOFTWARE
ZN A:511 , HOH A:1105
BINDING SITE FOR RESIDUE ZN A 531
05
AC5
SOFTWARE
GLU A:67 , GLU A:71 , ASP B:46 , ASP B:48 , ZN B:551 , HOH B:1106 , HOH B:1107
BINDING SITE FOR RESIDUE ZN B 541
06
AC6
SOFTWARE
GLU A:67 , ASP B:46 , ASP B:48 , ASP B:79 , ZN B:541 , HOH B:1108
BINDING SITE FOR RESIDUE ZN B 551
07
AC7
SOFTWARE
GLU A:88 , GLU A:92 , HOH A:1110 , ASP B:8
BINDING SITE FOR RESIDUE ZN A 561
08
AC8
SOFTWARE
GLU B:67 , GLU B:71 , SO4 B:601 , SO4 B:602
BINDING SITE FOR RESIDUE ZN B 571
09
AC9
SOFTWARE
LYS A:42 , LYS A:43 , GLU B:67 , GLU B:71 , ZN B:571 , SO4 B:602 , NA B:701
BINDING SITE FOR RESIDUE SO4 B 601
10
BC1
SOFTWARE
GLU B:67 , GLU B:71 , ASP B:89 , ZN B:571 , SO4 B:601 , NA B:701 , HOH B:1230
BINDING SITE FOR RESIDUE SO4 B 602
11
BC2
SOFTWARE
ASP B:89 , SO4 B:601 , SO4 B:602 , HOH B:1230
BINDING SITE FOR RESIDUE NA B 701
12
BC3
SOFTWARE
ALA A:84 , THR A:86 , SER A:87 , ARG A:91 , HOH A:1131
BINDING SITE FOR RESIDUE GOL A 801
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1no5a_ (A:)
1b: SCOP_d1no5b_ (B:)
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Nucleotidyltransferase
(287)
Superfamily
:
Nucleotidyltransferase
(287)
Family
:
Catalytic subunit of bi-partite nucleotidyltransferase
(4)
Protein domain
:
Hypothetical protein HI0073
(1)
Haemophilus influenzae [TaxId: 727]
(1)
1a
d1no5a_
A:
1b
d1no5b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1no5B00 (B:4-105)
1b: CATH_1no5A00 (A:6-105)
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)
Organisms
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)
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)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
Beta Polymerase; domain 2
(187)
Homologous Superfamily
:
Beta Polymerase, domain 2
(183)
Haemophilus influenzae. Organism_taxid: 727.
(1)
1a
1no5B00
B:4-105
1b
1no5A00
A:6-105
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_NTP_transf_2_1no5B01 (B:14-105)
1b: PFAM_NTP_transf_2_1no5B02 (B:14-105)
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Clan
:
NTP_transf
(45)
Family
:
NTP_transf_2
(35)
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
(1)
1a
NTP_transf_2-1no5B01
B:14-105
1b
NTP_transf_2-1no5B02
B:14-105
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Show PDB file:
Asym.Unit (48 KB)
Header - Asym.Unit
Biol.Unit 1 (22 KB)
Header - Biol.Unit 1
Biol.Unit 2 (22 KB)
Header - Biol.Unit 2
Biol.Unit 3 (121 KB)
Header - Biol.Unit 3
Biol.Unit 4 (121 KB)
Header - Biol.Unit 4
Biol.Unit 5 (42 KB)
Header - Biol.Unit 5
Biol.Unit 6 (42 KB)
Header - Biol.Unit 6
Biol.Unit 7 (42 KB)
Header - Biol.Unit 7
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