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(-) Description

Title :  STRUCTURAL REFINEMENT OF THE NON-FLUORESCENT FLAVOPROTEIN FROM PHOTOBACTERIUM LEIOGNATHI AT 1.60 ANGSTROMS RESOLUTION
 
Authors :  S. A. Moore, M. N. G. Njames
Date :  27 Feb 95  (Deposition) - 03 Jun 95  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Flavin Mononucleotide, Myristate, Flavoprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Moore, M. N. James
Structural Refinement Of The Non-Fluorescent Flavoprotein From Photobacterium Leiognathi At 1. 60 A Resolution.
J. Mol. Biol. V. 249 195 1995
PubMed-ID: 7776372  |  Reference-DOI: 10.1006/JMBI.1995.0289
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUXF GENE PRODUCT
    Chains: A
    Engineered: YES
    Organism Scientific: PHOTOBACTERIUM LEIOGNATHI
    Organism Taxid: 658

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric Unit (3, 5)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
2MYR2Ligand/IonMYRISTIC ACID
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1FMN4Ligand/IonFLAVIN MONONUCLEOTIDE
2MYR4Ligand/IonMYRISTIC ACID
3SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:109 , HOH A:363BINDING SITE FOR RESIDUE SO4 A 423
2AC2SOFTWARETYR A:14 , PRO A:21 , THR A:60 , LYS A:61 , PRO A:64 , THR A:77 , SER A:78 , THR A:81 , LYS A:84 , HOH A:248 , HOH A:303 , HOH A:375 , HOH A:385 , HOH A:393 , HOH A:396 , HOH A:397 , MYR A:424BINDING SITE FOR RESIDUE FMN A 229
3AC3SOFTWARELEU A:32 , PHE A:65 , LYS A:87 , TYR A:88 , FMN A:229BINDING SITE FOR RESIDUE MYR A 424
4AC4SOFTWAREMET A:1 , THR A:2 , TRP A:4 , ALA A:182 , TYR A:221 , HOH A:261 , HOH A:266 , HOH A:360 , MYR A:425BINDING SITE FOR RESIDUE FMN A 230
5AC5SOFTWARETYR A:6 , PHE A:198 , LEU A:210 , ARG A:217 , VAL A:218 , TYR A:221 , FMN A:230 , HOH A:266 , HOH A:318BINDING SITE FOR RESIDUE MYR A 425

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1NFP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1NFP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1NFP)

(-) PROSITE Motifs  (1, 1)

Asymmetric Unit (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIAL_LUCIFERASEPS00494 Bacterial luciferase subunits signature.LUXF_PHOLE89-114  1A:89-114
Biological Unit 1 (1, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1BACTERIAL_LUCIFERASEPS00494 Bacterial luciferase subunits signature.LUXF_PHOLE89-114  2A:89-114

(-) Exons   (0, 0)

(no "Exon" information available for 1NFP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
 aligned with LUXF_PHOLE | P09142 from UniProtKB/Swiss-Prot  Length:228

    Alignment length:228
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220        
           LUXF_PHOLE     1 MTKWNYGVFFLNFYHVGQQEPSLTMSNALETLRIIDEDTSIYDVVAFSEHHIDKSYNDETKLAPFVSLGKQIHILATSPETVVKAAKYGMPLLFKWDDSQQKRIELLNHYQAAAAKFNVDIAGVRHRLMLFVNVNDNPTQAKAELSIYLEDYLSYTQAETSIDEIINSNAAGNFDTCLHHVAEMAQGLNNKVDFLFCFESMKDQENKKSLMINFDKRVINYRKEHNLN 228
               SCOP domains d1nfpa_ A: Non-fluorescent flavoprotein (luxF, FP390)                                                                                                                                                                                SCOP domains
               CATH domains 1nfpA00 A:1-228 FMN dependent fluorescent proteins                                                                                                                                                                                   CATH domains
               Pfam domains --------------------------------------------------------------------Bac_luciferase-1nfpA01 A:69-192                                                                                             ------------------------------------ Pfam domains
         Sec.struct. author .......eeee.........hhhhhhhhhhhhhhhhh.......eeee................eeee..eeeee...hhhhhhhhh...eeee.....hhhhhhhhhhhhhhhhh.........eeeeeeeee...hhhhhhhhhhhhhhhhhh......hhhhhh..eee.hhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------BACTERIAL_LUCIFERASE      ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1nfp A   1 MTKWNYGVFFLNFYHVGQQEPSLTMSNALETLRIIDEDTSIYDVVAFSEHHIDKSYNDETKLAPFVSLGKQIHVLATSPETVVKAAKYGMPLLFKWDDSQQKRIELLNHYQAAAAKFNVDIANVRHRLMLFVNVNDNPTQAKAELSIYLEDYLSYTQAETSIDEIINSNAAGNFDTCLHHVAEMAQGLNNKVDFLFCFESMKDQENKKSLMINFDKRVINYRKEHNLN 228
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: no clan defined [family: Bac_luciferase] (10)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (LUXF_PHOLE | P09142)
molecular function
    GO:0047646    alkanal monooxygenase (FMN-linked) activity    Catalysis of the reaction: R-CHO + reduced FMN + O2 = R-COOH + FMN + H2O + light.
    GO:0004497    monooxygenase activity    Catalysis of the incorporation of one atom from molecular oxygen into a compound and the reduction of the other atom of oxygen to water.
    GO:0016705    oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen    Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced or incorporated into a donor.
biological process
    GO:0008218    bioluminescence    The production of light by certain enzyme-catalyzed reactions in cells.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1nfp
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  LUXF_PHOLE | P09142
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LUXF_PHOLE | P09142: 4j2p

(-) Related Entries Specified in the PDB File

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