1NFD - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   AN ALPHA-BETA T CELL RECEPTOR (TCR) HETERODIMER IN COMPLEX WITH AN ANTI-TCR FAB FRAGMENT DERIVED FROM A MITOGENIC ANTIBODY

Authors :   J. -H. Wang, K. Lim, A. Smolyar, M. -K. Teng, J. Sacchittini, E. L. Reinhe

Date :   04 Aug 97 (Deposition) - 28 Jan 98 (Release) - 05 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: C,D,G,H  (1x)
Biol. Unit 2: A,B,E,F  (1x)
Biol. Unit 3: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x)

Keywords :   Complex (Immunoreceptor-Immunoglobulin), Complex (Immunoreceptor- Immunoglobulin) Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Wang, K. Lim, A. Smolyar, M. Teng, J. Liu, A. G. Tse, J. Liu, R. E. Hussey, Y. Chishti, C. T. Thomson, R. M. Sweet, S. G. Nathenson, H. C. Chang, J. C. Sacchettini, E. L. Reinherz
Atomic Structure Of An Alphabeta T Cell Receptor (Tcr) Heterodimer In Complex With An Anti-Tcr Fab Fragment Derive From A Mitogenic Antibody.
Embo J. V. 17 10 1998
PubMed-ID: 9427737 | Reference-DOI: 10.1093/EMBOJ/17.1.10
(for further references see the PDB file header)

Molecule 1 - N15 ALPHA-BETA T-CELL RECEPTOR
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	CH0 LEC 3.2.8.1
	Expression System Common	:	CHINESE HAMSTER
	Expression System Plasmid	:	PEE14-GS
	Expression System Taxid	:	10029
	Gene	:	N15 T-CELL RECEPTOR
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	CODON IN

Molecule 2 - N15 ALPHA-BETA T-CELL RECEPTOR
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	CH0 LEC 3.2.8.1
	Expression System Common	:	CHINESE HAMSTER
	Expression System Plasmid	:	PEE14-GS
	Expression System Taxid	:	10029
	Gene	:	N15 T-CELL RECEPTOR
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	CODON IN

Molecule 3 - H57 FAB
	Chains	:	E, G
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	CH0 LEC 3.2.8.1
	Expression System Common	:	CHINESE HAMSTER
	Expression System Plasmid	:	PEE14-GS
	Expression System Taxid	:	10029
	Gene	:	N15 T-CELL RECEPTOR
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	CODON IN

Molecule 4 - H57 FAB
	Chains	:	F, H
	Engineered	:	YES
	Expression System	:	CRICETULUS GRISEUS
	Expression System Cell Line	:	CH0 LEC 3.2.8.1
	Expression System Common	:	CHINESE HAMSTER
	Expression System Plasmid	:	PEE14-GS
	Expression System Taxid	:	10029
	Gene	:	N15 T-CELL RECEPTOR
	Organism Common	:	HOUSE MOUSE
	Organism Scientific	:	MUS MUSCULUS
	Organism Taxid	:	10090
	Other Details	:	CODON IN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:			C	D			G	H
Biological Unit 2 (1x)	:	A	B			E	F
Biological Unit 3 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 14)

No.	Name	Count	Type	Full Name
1	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
2	NDG	3	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	NAG	5	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
2	NDG	2	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
2	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	NAG	6	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
2	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:6 , LYS A:19 , ASN A:21	BINDING SITE FOR RESIDUE NAG A 214
02	AC2	SOFTWARE	ASN A:185 , GLN A:186 , VAL E:146 , THR E:147 , ASN E:156	BINDING SITE FOR RESIDUE NAG A 215
03	AC3	SOFTWARE	ASN A:203 , ILE E:5 , PRO E:7 , THR E:22 , CYS E:23 , SER E:24	BINDING SITE FOR RESIDUE NAG A 216
04	AC4	SOFTWARE	ARG B:18 , ASN B:78	BINDING SITE FOR RESIDUE NDG B 248
05	AC5	SOFTWARE	ASP B:118 , ASN B:121 , PHE F:98	BINDING SITE FOR RESIDUE NAG B 249
06	AC6	SOFTWARE	ASN B:186 , TYR B:187	BINDING SITE FOR RESIDUE NAG B 250
07	AC7	SOFTWARE	GLN B:213 , GLN B:215 , ASN B:236	BINDING SITE FOR RESIDUE NAG B 251
08	AC8	SOFTWARE	THR C:6 , ASN C:21	BINDING SITE FOR RESIDUE NDG C 214
09	AC9	SOFTWARE	GLY C:159 , ASN C:185	BINDING SITE FOR RESIDUE NDG C 215
10	BC1	SOFTWARE	PRO C:123 , ASN C:203 , ALA C:204	BINDING SITE FOR RESIDUE NAG C 216
11	BC2	SOFTWARE	ARG D:18 , ASN D:78	BINDING SITE FOR RESIDUE NAG D 248
12	BC3	SOFTWARE	ASP D:118 , ASN D:121 , TYR D:187 , PHE H:98	BINDING SITE FOR RESIDUE NAG D 249
13	BC4	SOFTWARE	LYS D:180 , ASN D:186 , TYR D:187	BINDING SITE FOR RESIDUE NAG D 250
14	BC5	SOFTWARE	ARG D:211 , GLN D:213 , ASN D:236	BINDING SITE FOR RESIDUE NAG D 251

Asymmetric Unit

No.	Residues
1	A:22	-	A:90
2	A:141	-	A:191
3	A:213	-	B:247
4	B:23	-	B:92
5	B:147	-	B:212
6	C:22	-	C:90
7	C:141	-	C:191
8	C:213	-	D:247
9	D:23	-	D:92
10	D:147	-	D:212
11	E:23	-	E:88
12	E:134	-	E:194
13	E:214	-	F:128
14	F:22	-	F:92
15	F:142	-	F:208
16	G:23	-	G:88
17	G:134	-	G:194
18	G:214	-	H:128
19	H:22	-	H:92
20	H:142	-	H:208

Asymmetric Unit

No.	Residues
1	Ser B:7	-	Pro B:8
2	Phe B:153	-	Pro B:154
3	Ser D:7	-	Pro D:8
4	Tyr E:140	-	Pro E:141
5	Tyr G:140	-	Pro G:141

Asymmetric Unit (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TCB1_MOUSE_001 *	Y	70	H	TCB1_MOUSE	---	---	B/D	Y	190	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TCB1_MOUSE_001 *	Y	70	H	TCB1_MOUSE	---	---	D	Y	190	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TCB1_MOUSE_001 *	Y	70	H	TCB1_MOUSE	---	---	B	Y	190	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_TCB1_MOUSE_001 *	Y	70	H	TCB1_MOUSE	---	---	B/D	Y	190	H
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1NFD)

(no "Exon" information available for 1NFD)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                            
               SCOP domains d1nfda1 A:1-117 T-cell antigen receptor                                                                          d1nfda2 A:118-213 T-cell antigen receptor                                                  SCOP domains
               CATH domains 1nfdA01 A:1-116 Immunoglobulins                                                                                 1nfdA02 A:117-213 Immunoglobulins                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee............eee.eeee....eeeeeeeee.....eeeeeee....eeee...eeeeee....eeeeee....hhh.eeeeeeeee...........eee...........eeeee........eeeeee.....................eeee......eeee.eeee......hhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd A    1 DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGTRLKVIAHIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPC  213
                                    10        20        30|       39        49        59|       70        80        90   ||  104       114       124    || 136       146       156       166       176       186       196 ||    210   
                                                        30A                           59|                               94|                           129|                                                               198|          
                                                                                       61                                99                            132                                                                203

Chain B from PDB  Type:PROTEIN  Length:239
 aligned with TCB1_MOUSE | P01852 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:239
                                                                                                                                            1                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88        98       108       118         
          TCB1_MOUSE      - ----------------------------------------------------------------------------------------------------------------EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC  127
               SCOP domains d1nfdb1 B:1-117 T-cell antigen receptor                                                                          d1nfdb2 B:118-247 T-cell antigen receptor                                                                                      SCOP domains
               CATH domains --1nfdB01 B:3-117 Immunoglobulins                                                                                1nfdB02 B:118-246 Immunoglobulins                                                                                            - CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeeee.....eeeee......eeeeee.......eeeeeee...eeee................eeee.....hhh.eee.eeee............eeeeee..hhh....eeeee...hhhhhhh.eeeeeeeeeee....eeeeeee........eee....eeee..eeeeeeeeeeehhhhh.....eeeeeee..................eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd B    1 DSGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC  247
                                    10        20        30        40        50        60 ||     71        81        91       105       115 |     124       134       144       154       164       174       187|      198       208       218       228       238         
                                                                                        62|                                 100|        116A                                                               182|||                                                          
                                                                                         64                                  105                                                                            186||                                                          
                                                                                                                                                                                                             187|                                                          
                                                                                                                                                                                                              189

Chain C from PDB  Type:PROTEIN  Length:203
                                                                                                                                                                                                                                            
               SCOP domains d1nfdc1 C:1-117 T-cell antigen receptor                                                                          d1nfdc2 C:118-213 T-cell antigen receptor                                                  SCOP domains
               CATH domains 1nfdC01 C:1-116 Immunoglobulins                                                                                 1nfdC02 C:117-213 Immunoglobulins                                                           CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eee....eee.........eeeeeeeeee....eeeeeee........................eee....hhh.eeeeeeeee..............eee........eee..........eeeeee...............eee...eee........eeeeeeee......hhhh............... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd C    1 DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGTRLKVIAHIQNPEPAVYQLKDPRSQDSTLCLFTDFDSQINVPKTMESGTFITDKTVLDMKAMDSKSNGAIAWSNQTSFTCQDIFKETNATYPSSDVPC  213
                                    10        20        30|       39        49        59|       70        80        90   ||  104       114       124    || 136       146       156       166       176       186       196 ||    210   
                                                        30A                           59|                               94|                           129|                                                               198|          
                                                                                       61                                99                            132                                                                203

Chain D from PDB  Type:PROTEIN  Length:239
 aligned with TCB1_MOUSE | P01852 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:239
                                                                                                                                            1                                                                                                                              
                                     -         -         -         -         -         -         -         -         -         -         -  |      8        18        28        38        48        58        68        78        88        98       108       118         
          TCB1_MOUSE      - ----------------------------------------------------------------------------------------------------------------EDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC  127
               SCOP domains d1nfdd1 D:1-117 T-cell antigen receptor                                                                          d1nfdd2 D:118-247 T-cell antigen receptor                                                                                      SCOP domains
               CATH domains --1nfdD01 D:3-117 Immunoglobulins                                                                                1nfdD02 D:118-246 Immunoglobulins                                                                                            - CATH domains
           Pfam domains (1) ------------------------------------------------------------------------------------------------------------------------------C1-set-1nfdD01 D:131-224                                                                  ----------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------------------------------------------------------------------------C1-set-1nfdD02 D:131-224                                                                  ----------------------- Pfam domains (2)
         Sec.struct. author ....eee..eeeee...eeeeeee......eeeeeee.....eeeeeeee..............eeee.....eeeeee...hhh.eeeeeeee............eeeeee..hhh............hhhhhh..eeeeeeee........eeeeee..eee...eee.............eeeeeeeehhhhh.....eeeeeee..................eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H--------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd D    1 DSGVVQSPRHIIKEKGGRSVLTCIPISGHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLSEEDKWPEGSPKPVTQNISAEAWGRADC  247
                                    10        20        30        40        50        60 ||     71        81        91       105       115 |     124       134       144       154       164       174       187|      198       208       218       228       238         
                                                                                        62|                                 100|        116A                                                               182|||                                                          
                                                                                         64                                  105                                                                            186||                                                          
                                                                                                                                                                                                             187|                                                          
                                                                                                                                                                                                              189

Chain E from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d1nfde1 E:2-107 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1nfde2 E:108-215 Immunoglobulin light chain lambda constant domain, CL-lambda                           SCOP domains
               CATH domains 1nfdE01 E:2-107 Immunoglobulins                                                                             1nfdE02 E:108-215 Immunoglobulins                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee..eeeee......eeeee..hhh...eeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeeeee....eeee....eeeee.......eee.....hhhhhh......eeeeee.....eeeeee..eee...............eeeee.....hhhhh....eeeeee.........eee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd E    2 YELIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKSLSPAECL  215
                                   |12        22        32        42        52        62        72        82        92   ||  100      |109       119       129       139       149       159       171       181       191       203       213  
                                   9|                                                                                  95A|        106A                                                          167|                           200|            
                                   11                                                                                   95B                                                                       170                            203

Chain F from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains d1nfdf1 F:1-114 Immunoglobulin heavy chain variable domain, VH                                                           d1nfdf2 F:115-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1nfdF01 F:1-113 Immunoglobulins                                                                                         1nfdF02 F:114-226 Immunoglobulins                                                                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..eee....eeeeeeeee...hhheeeeeeee.....eeeeeee........eee.hhh.............eeeeeee...hhh....eeeeee.............eee.........................eee............eeeeehhh.....eee.............eeeeeehhhh.....eeeeee......eeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1nfd F    1 EVYLVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAGRFDHFDYWGQGTMVTVSSATTTAPSVYPLAPACDSTTSTTDTVTLGCLVKGYFPEPVTVSWNSGALTSGVHTFPSVLHSGLYSLSSSVTVPSSTWPKQPITCNVAHPASSTKVDKKIEPR  228
                                    10        20        30        40        50  |||   57        67        77     |||84        94      |103       113       123       133       143       153||||   168||     179||     191    || 203  ||   214       226  
                                                                              52A||                            82A||               100A                                                   154|||    169|      180|          196| || 206|           222|   
                                                                               52B|                             82B|                                                                       156||     171       183           198 ||  208            225   
                                                                                52C                              82C                                                                        157|                               200|                       
                                                                                                                                                                                             162                                202

Chain G from PDB  Type:PROTEIN  Length:212
                                                                                                                                                                                                                                                     
               SCOP domains d1nfdg1 G:2-107 Immunoglobulin light chain lambda variable domain, VL-lambda                                d1nfdg2 G:108-215 Immunoglobulin light chain lambda constant domain, CL-lambda                           SCOP domains
               CATH domains 1nfdG01 G:2-107 Immunoglobulins                                                                             1nfdG02 G:108-215 Immunoglobulins                                                                        CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeee....eeeeee........eeeeee.....eeeee.............eeeeee..eeeeee....hhh..eeeeeeee....eeee....eeeee...............hhhhh.......eee....................................eee.....hhhh........................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1nfd G    2 YELIQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKSLSPAECL  215
                                   |12        22        32        42        52        62        72        82        92   ||  100      |109       119       129       139       149       159       171       181       191       203       213  
                                   9|                                                                                  95A|        106A                                                          167|                           200|            
                                   11                                                                                   95B                                                                       170                            203

Chain H from PDB  Type:PROTEIN  Length:222
                                                                                                                                                                                                                                                               
               SCOP domains d1nfdh1 H:1-114 Immunoglobulin heavy chain variable domain, VH                                                           d1nfdh2 H:115-228 Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma                       SCOP domains
               CATH domains 1nfdH01 H:1-113 Immunoglobulins                                                                                         1nfdH02 H:114-226 Immunoglobulins                                                                   -- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee..........eeeeeeee...hhh.eeeeeee.....eeeeeee........eee.hhh...eeeeee....eeeeee....hhh....eeeee.........................eeeeee...........eeeeeeeeeee.....eeeehhh.....eee.........eeeeeeeeee..........eeee............... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                1nfd H    1 EVYLVESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRAGRFDHFDYWGQGTMVTVSSATTTAPSVYPLAPACDSTTSTTDTVTLGCLVKGYFPEPVTVSWNSGALTSGVHTFPSVLHSGLYSLSSSVTVPSSTWPKQPITCNVAHPASSTKVDKKIEPR  228
                                    10        20        30        40        50  |||   57        67        77     |||84        94      |103       113       123       133       143       153||||   168||     179||     191    || 203  ||   214       226  
                                                                              52A||                            82A||               100A                                                   154|||    169|      180|          196| || 206|           222|   
                                                                               52B|                             82B|                                                                       156||     171       183           198 ||  208            225   
                                                                                52C                              82C                                                                        157|                               200|                       
                                                                                                                                                                                             162                                202

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: Immunoglobulins (2282)

House mouse (Mus musculus) (616)

1a	1nfdF02	F:114-226
1b	1nfdH02	H:114-226
1c	1nfdE01	E:2-107
1d	1nfdG01	G:2-107
1e	1nfdB01	B:3-117
1f	1nfdD01	D:3-117
1g	1nfdE02	E:108-215
1h	1nfdG02	G:108-215
1i	1nfdF01	F:1-113
1j	1nfdH01	H:1-113
1k	1nfdA02	A:117-213
1l	1nfdC02	C:117-213
1m	1nfdB02	B:118-246
1n	1nfdD02	D:118-246
1o	1nfdA01	A:1-116
1p	1nfdC01	C:1-116

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Ig (577)

Family: C1-set (338)

Mus musculus (Mouse) (118)

1a	C1-set-1nfdD01	D:131-224
1b	C1-set-1nfdD02	D:131-224

Asymmetric Unit(hide GO term definitions)

Chain B,D (TCB1_MOUSE | P01852)

cellular component
	GO:0016021		integral component of membrane		The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020		membrane		A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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		Tyr E:140 - Pro E:141	[ RasMol ]
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	1nfd
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	TCB1_MOUSE \| P01852	:	1g6r 1sbb 3c6l 3mbe

(no "Related Entries Specified in the PDB File" available for 1NFD)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 14)

Sites (14, 14)

SS Bonds (20, 20)

Cis Peptide Bonds (5, 5)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 2)

PROSITE Motifs (0, 0)

Exons (0, 0)

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SCOP Domains (8, 16)

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Pfam Domains (1, 2)

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